HHsearch alignment for GI: 254780711 and conserved domain: CHL00072
>CHL00072 chlL photochlorophyllide reductase subunit L.
Probab=95.82 E-value=0.014 Score=39.84 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=84.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-----------CHHHHHHHHHH---H-----------CCC
Q ss_conf 8996234433346889999999986148950782054221-----------00477999985---1-----------034
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR-----------PAAQEQLRYLG---E-----------QIQ 156 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R-----------~aA~eQL~~~a---~-----------~~~ 156 (461)
T Consensus 2 ~iaiyGKGGIGKSTtsaNlsaaLA~-~GkkVl~IGcDpk~DsT~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~~g 80 (271)
T CHL00072 2 KIAVYGKGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGYGG 80 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCCC
T ss_conf 6999789854485889999999998-799799978997377774006998885999997537873216499998527788
Q ss_pred CCCCCC---CCCC----HHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH--HCC
Q ss_conf 742223---3210----368999999999974-158869983344222112468999999851385110003101--112
Q gi|254780711|r 157 VDTLEV---IPEQ----SPEKIAIRATQSARD-GGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA--LTG 226 (461)
Q Consensus 157 v~~~~~---~~~~----dp~~i~~~a~~~a~~-~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da--~~G 226 (461)
T Consensus 81 i~cvEaGGPepGvGCaGrgi~~~i~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~-Pi----~--~Ad~~~iVts~e~mal 153 (271)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKELNAFYEYDVILFDVLGDVVCGGFAA-PL----N--YADYCIIITDNGFDAL 153 (271)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCC-CC----C--CCCEEEEEECCCHHHH
T ss_conf 466543899988777886519999999973762138889994477655654567-50----0--0888999956708899
Q ss_pred HHHHHHHHHHHH---H--CCCCCEEEEECCCCCCCCHHHH-HHHHHCCCHH
Q ss_conf 256888898876---3--5844077641157663303677-7888478730
Q gi|254780711|r 227 QDAVHLARNFDK---I--VDLTGIILTRMDGDGRGGAALS-MRTVTGKPIK 271 (461)
Q Consensus 227 q~a~~~a~~F~~---~--~~i~giIlTKlD~~akgG~als-~~~~~~~PI~ 271 (461)
T Consensus 154 yaANnI~~~i~~~a~~~~~rl~GiI~N~~~~----~~~v~~fa~~~g~~~i 200 (271)
T CHL00072 154 FAANRIAASVREKARTHPLRLAGLVGNRTSK----RDLIDKYVEACPMPVL 200 (271)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCC----HHHHHHHHHHCCCCEE
T ss_conf 9999999999997304686444365226883----7899999997399669