HHsearch alignment for GI: 254780711 and conserved domain: COG0466
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].
Probab=95.46 E-value=0.29 Score=29.90 Aligned_cols=107 Identities=21% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC----------CC---CCHHHHHHHHHHHCCC-------CC
Q ss_conf 8418996234433346889999999986148950782054----------22---1004779999851034-------74
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD----------VH---RPAAQEQLRYLGEQIQ-------VD 158 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D----------t~---R~aA~eQL~~~a~~~~-------v~ 158 (461)
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~R-kfvR~sLGGvrDEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEID 427 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGR-KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEID 427 (782)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCC-CEEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHH
T ss_conf 8857999789988701189999999589-779995476542777535531233568728999999867768747864033
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH---------HCCCC---EEEEECCCCCC-CHHHHHHHHH
Q ss_conf 2223321036899999999997---------41588---69983344222-1124689999
Q gi|254780711|r 159 TLEVIPEQSPEKIAIRATQSAR---------DGGYD---AVILDTAGRNH-INDSLMQEIS 206 (461)
Q Consensus 159 ~~~~~~~~dp~~i~~~a~~~a~---------~~~~D---~iiiDTaGR~~-~d~~lm~El~ 206 (461)
T Consensus 428 Km~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME 488 (782)
T COG0466 428 KMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME 488 (782)
T ss_pred HCCCCCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCCCCCHHHHCCEE
T ss_conf 3167777886888886269765676122201676644325888603751329867843030