HHsearch alignment for GI: 254780711 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=97.03 E-value=0.0098 Score=41.07 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=67.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 41899623443334688999999998614895078205422100477999985103474222332103689999999999
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSA 179 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a 179 (461)
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-LDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH-HCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 35899846887654668999988865379808999589998999999988754-21536866897799999999998754
Q ss_pred HHCCCCEEEEECCCCCCC
Q ss_conf 741588699833442221
Q gi|254780711|r 180 RDGGYDAVILDTAGRNHI 197 (461)
Q Consensus 180 ~~~~~D~iiiDTaGR~~~ 197 (461)
T Consensus 139 ~~-~i~LvVVDSvaa~~r 155 (279)
T COG0468 139 AE-KIDLLVVDSVAALVR 155 (279)
T ss_pred CC-CCCEEEEECCCCCCH
T ss_conf 68-878899825743463