HHsearch alignment for GI: 254780711 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=591.90 Aligned_cols=290 Identities=37% Similarity=0.555 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCCCCCCCCCHHHHH
Q ss_conf 40377999999987428------8878989999999999999985246969999999999999-8303111269989999
Q gi|254780711|r 2 FDNLQERLGSIFQNITG------KGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEK-AKGEKILRSIQPGQMV 74 (461)
Q Consensus 2 f~~L~~~l~~~~~~l~~------~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k-~~~~~~~~~~~~~~~i 74 (461)
T Consensus 34 ~~~~~~gl~k~~~~~~~~~~~~~~~~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~----~~~~~~v 109 (340)
T COG0552 34 FERLKQGLSKTKKNFGKGIKGLFLKKIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKK----IKDEETV 109 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC----CCCHHHH
T ss_conf 999988999999999998766301234430048899999999997024699999999999987510236----8988999
Q ss_pred HHHHHHHHHHHHCCCCC----CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 99999999987187742----10002588418996234433346889999999986148950782054221004779999
Q gi|254780711|r 75 IKIVHDELVEVLGKESI----ELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRY 150 (461)
Q Consensus 75 ~kiv~~eL~~lLg~~~~----~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~ 150 (461)
T Consensus 110 ~~~l~~~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~ 188 (340)
T COG0552 110 KEALREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEV 188 (340)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99999999998465544443655235898679999934888637179999999997-89869998233478999999999
Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------CCCCCCCCCHH
Q ss_conf 851034742223321036899999999997415886998334422211246899999985138------51100031011
Q gi|254780711|r 151 LGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------PHEILLVADAL 224 (461)
Q Consensus 151 ~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------p~e~~lV~da~ 224 (461)
T Consensus 189 w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 189 WGERLGVPVISGKEGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred HHHHHCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 99995992782599998089999999999976999999967554457366899999999984645689984289997756
Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 122568888988763584407764115766330367778884787302615867232100136889987735
Q gi|254780711|r 225 TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILG 296 (461)
Q Consensus 225 ~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLG 296 (461)
T Consensus 269 tGqnal~QAk~F~eav~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 269 TGQNALSQAKIFNEAVGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf 475689999999875288669997024677762435088886999799857888443200699999998609