HHsearch alignment for GI: 254780711 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=100.00 E-value=3.5e-44 Score=357.27 Aligned_cols=219 Identities=28% Similarity=0.393 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999871877421000258841899623443334688999999998-61489507820542210047799998
Q gi|254780711|r 73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLK-TLKKKKILMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~-~~~~~kV~lv~~Dt~R~aA~eQL~~~ 151 (461)
T Consensus 178 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Y 255 (407)
T COG1419 178 EDLRYFSEKLRKLLLSLIENL--IVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTY 255 (407)
T ss_pred CHHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 123217999999887644111--124685799989988758879999999997532576068997144115289999999
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHC-CHHHH
Q ss_conf 51034742223321036899999999997415886998334422211246899999985138511000310111-22568
Q gi|254780711|r 152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALT-GQDAV 230 (461)
Q Consensus 152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~-Gq~a~ 230 (461)
T Consensus 256 a~im~vp~~vv~~~---~el-~~ai~~l~--~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 256 ADIMGVPLEVVYSP---KEL-AEAIEALR--DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred HHHHCCCEEEECCH---HHH-HHHHHHHH--CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHH
T ss_conf 99869955996399---999-99999853--1888999689988337899999999970356621799984576468899
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCH
Q ss_conf 8889887635844077641157663303677788847873026158672-321001368899877358627
Q gi|254780711|r 231 HLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDV 300 (461)
Q Consensus 231 ~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~ 300 (461)
T Consensus 330 ei~~~f~-~~~i~~~I~TKlDET~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 330 EIIKQFS-LFPIDGLIFTKLDETTSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred HHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHCCCCC
T ss_conf 9999724-588661689713356763389999999689749971798787035535868899998612144