HHsearch alignment for GI: 254780711 and conserved domain: COG1643

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.18  E-value=5.8e-05  Score=58.06  Aligned_cols=150  Identities=19%  Similarity=0.282  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             99999999999871877421000258841899623443334688999999998614895078205422100477999985
Q gi|254780711|r   73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG  152 (461)
Q Consensus        73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a  152 (461)
T Consensus        49 LPv~~~~~~i~~ai~~-----------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvA  115 (845)
T COG1643          49 LPVTAVRDEILKAIEQ-----------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVA  115 (845)
T ss_pred             CCCHHHHHHHHHHHHH-----------CCEEEEECCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHH
T ss_conf             9818889999999986-----------978998679988758788999996001--668759965843899999999999


Q ss_pred             HCCCCCC-----CCCCCC-----CHHHHHHHHHH------HHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCC
Q ss_conf             1034742-----223321-----03689999999------999741588699833442221124-689999998513851
Q gi|254780711|r  153 EQIQVDT-----LEVIPE-----QSPEKIAIRAT------QSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPH  215 (461)
Q Consensus       153 ~~~~v~~-----~~~~~~-----~dp~~i~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~  215 (461)
T Consensus       116 eel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D  195 (845)
T COG1643         116 EELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD  195 (845)
T ss_pred             HHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98389867654379996226787714689514799999843802045877997013355688899999999998646887


Q ss_pred             CCCCCCCHHCCHHHHHHHHHHH
Q ss_conf             1000310111225688889887
Q gi|254780711|r  216 EILLVADALTGQDAVHLARNFD  237 (461)
Q Consensus       216 e~~lV~da~~Gq~a~~~a~~F~  237 (461)
T Consensus       196 LKiIimSATld~~--rfs~~f~  215 (845)
T COG1643         196 LKLIIMSATLDAE--RFSAYFG  215 (845)
T ss_pred             CEEEEEECCCCHH--HHHHHCC
T ss_conf             0599972535889--9997628