HHsearch alignment for GI: 254780711 and conserved domain: COG1643
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair].
Probab=98.18 E-value=5.8e-05 Score=58.06 Aligned_cols=150 Identities=19% Similarity=0.282 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999999999871877421000258841899623443334688999999998614895078205422100477999985
Q gi|254780711|r 73 MVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLG 152 (461)
Q Consensus 73 ~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a 152 (461)
T Consensus 49 LPv~~~~~~i~~ai~~-----------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvA 115 (845)
T COG1643 49 LPVTAVRDEILKAIEQ-----------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVA 115 (845)
T ss_pred CCCHHHHHHHHHHHHH-----------CCEEEEECCCCCCHHHHHHHHHHHHHC--CCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 9818889999999986-----------978998679988758788999996001--668759965843899999999999
Q ss_pred HCCCCCC-----CCCCCC-----CHHHHHHHHHH------HHHHHCCCCEEEEECCCCCCCHHH-HHHHHHHHHHHCCCC
Q ss_conf 1034742-----223321-----03689999999------999741588699833442221124-689999998513851
Q gi|254780711|r 153 EQIQVDT-----LEVIPE-----QSPEKIAIRAT------QSARDGGYDAVILDTAGRNHINDS-LMQEISEIKSLTNPH 215 (461)
Q Consensus 153 ~~~~v~~-----~~~~~~-----~dp~~i~~~a~------~~a~~~~~D~iiiDTaGR~~~d~~-lm~El~~i~~~~~p~ 215 (461)
T Consensus 116 eel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 116 EELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred HHHCCCCCCEEEEEEEEECCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98389867654379996226787714689514799999843802045877997013355688899999999998646887
Q ss_pred CCCCCCCHHCCHHHHHHHHHHH
Q ss_conf 1000310111225688889887
Q gi|254780711|r 216 EILLVADALTGQDAVHLARNFD 237 (461)
Q Consensus 216 e~~lV~da~~Gq~a~~~a~~F~ 237 (461)
T Consensus 196 LKiIimSATld~~--rfs~~f~ 215 (845)
T COG1643 196 LKLIIMSATLDAE--RFSAYFG 215 (845)
T ss_pred CEEEEEECCCCHH--HHHHHCC
T ss_conf 0599972535889--9997628