HHsearch alignment for GI: 254780711 and conserved domain: COG2804

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.95  E-value=0.0017  Score=46.89  Aligned_cols=77  Identities=25%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             CCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             841-8996234433346889999999986148950782054--2210047799998510347422233210368999999
Q gi|254780711|r   99 SPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA  175 (461)
Q Consensus        99 ~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a  175 (461)
T Consensus       256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~nI~TiE-DPVE~~~~gI~Q~qVN~k-~gltfa-------------~~  319 (500)
T COG2804         256 RPQGLILVTGPTGSGKTTTLYAALSELNT-PERNIITIE-DPVEYQLPGINQVQVNPK-IGLTFA-------------RA  319 (500)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCEEEECCCCCEEECCCC-CCCCHH-------------HH
T ss_conf             89708999689999889999999998627-885089840-780451598515631403-599789-------------99


Q ss_pred             HHHHHHCCCCEEEEEC
Q ss_conf             9999741588699833
Q gi|254780711|r  176 TQSARDGGYDAVILDT  191 (461)
Q Consensus       176 ~~~a~~~~~D~iiiDT  191 (461)
T Consensus       320 LRa~LRqDPDvImVGE  335 (500)
T COG2804         320 LRAILRQDPDVIMVGE  335 (500)
T ss_pred             HHHHHCCCCCEEEEEC
T ss_conf             9998665998599835