HHsearch alignment for GI: 254780711 and conserved domain: COG2804
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=96.95 E-value=0.0017 Score=46.89 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=53.6
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 841-8996234433346889999999986148950782054--2210047799998510347422233210368999999
Q gi|254780711|r 99 SPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRA 175 (461)
Q Consensus 99 ~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a 175 (461)
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~-~~~nI~TiE-DPVE~~~~gI~Q~qVN~k-~gltfa-------------~~ 319 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNT-PERNIITIE-DPVEYQLPGINQVQVNPK-IGLTFA-------------RA 319 (500)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCEEEECCCCCEEECCCC-CCCCHH-------------HH
T ss_conf 89708999689999889999999998627-885089840-780451598515631403-599789-------------99
Q ss_pred HHHHHHCCCCEEEEEC
Q ss_conf 9999741588699833
Q gi|254780711|r 176 TQSARDGGYDAVILDT 191 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT 191 (461)
T Consensus 320 LRa~LRqDPDvImVGE 335 (500)
T COG2804 320 LRAILRQDPDVIMVGE 335 (500)
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9998665998599835