HHsearch alignment for GI: 254780711 and conserved domain: COG2874
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=97.05 E-value=0.0063 Score=42.56 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99999999998718774210002588418996234433346889999999986148950782054221004779999851
Q gi|254780711|r 74 VIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE 153 (461)
Q Consensus 74 i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~ 153 (461)
T Consensus 9 ii~~gndelDkrLGGGi-------P~GsL~lIEGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~refi~qm~sl~y 80 (235)
T COG2874 9 IIKSGNDELDKRLGGGI-------PVGSLILIEGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVREFIKQMESLSY 80 (235)
T ss_pred HCCCCCHHHHHHCCCCC-------CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECHHHHHHHHHHHHCCC
T ss_conf 20678477786516997-------46769999888985488999999998870-89548999840359999998886388
Q ss_pred CCC------------CCCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHH------HHHHHHHHHHHHCCC
Q ss_conf 034------------742223321036-8999999999974158869983344222112------468999999851385
Q gi|254780711|r 154 QIQ------------VDTLEVIPEQSP-EKIAIRATQSARDGGYDAVILDTAGRNHIND------SLMQEISEIKSLTNP 214 (461)
Q Consensus 154 ~~~------------v~~~~~~~~~dp-~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~------~lm~El~~i~~~~~p 214 (461)
T Consensus 81 dv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gK- 159 (235)
T COG2874 81 DVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGK- 159 (235)
T ss_pred CCHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCC-
T ss_conf 7168775062689993245422573778999999975577523778999534377652649999999999999872897-
Q ss_pred CCCCCCCCHHCCHHHHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHH
Q ss_conf 1100031011122568888988--76358440776411576633036777888478730261586723210013688
Q gi|254780711|r 215 HEILLVADALTGQDAVHLARNF--DKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDR 289 (461)
Q Consensus 215 ~e~~lV~da~~Gq~a~~~a~~F--~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~ 289 (461)
T Consensus 160 -vIilTvh----p~~l~e~~~~rirs~--~d~~l--~L~~~~~Gg~~~~~~~----i~K~~ga~~s~~~~I~F~V~P 223 (235)
T COG2874 160 -VIILTVH----PSALDEDVLTRIRSA--CDVYL--RLRLEELGGDLIKVLE----IVKYRGARKSFQNIISFRVEP 223 (235)
T ss_pred -EEEEEEC----HHHCCHHHHHHHHHH--HHEEE--EEEHHHHCCEEEEEEE----EEEECCCHHHCCCCEEEEECC
T ss_conf -8999947----343378999999875--20258--9870231784558778----766547133217740588559