HHsearch alignment for GI: 254780711 and conserved domain: COG3523

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].

Probab=96.61  E-value=0.0074  Score=42.02  Aligned_cols=69  Identities=28%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             EEEEECCCCCCCHH----HHHHHHHH------HHHHCCCCC-CCCCCCH---HCCHHHHH--H-------HHHHHHHCCC
Q ss_conf             69983344222112----46899999------985138511-0003101---11225688--8-------8988763584
Q gi|254780711|r  186 AVILDTAGRNHIND----SLMQEISE------IKSLTNPHE-ILLVADA---LTGQDAVH--L-------ARNFDKIVDL  242 (461)
Q Consensus       186 ~iiiDTaGR~~~d~----~lm~El~~------i~~~~~p~e-~~lV~da---~~Gq~a~~--~-------a~~F~~~~~i  242 (461)
T Consensus       176 aVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~  255 (1188)
T COG3523         176 AVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA  255 (1188)
T ss_pred             EEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             48985875244366750234888999888999735578886379997899973899999999999999999999984156


Q ss_pred             C---CEEEEECCCCC
Q ss_conf             4---07764115766
Q gi|254780711|r  243 T---GIILTRMDGDG  254 (461)
Q Consensus       243 ~---giIlTKlD~~a  254 (461)
T Consensus       256 ~~PVYl~lTk~Dll~  270 (1188)
T COG3523         256 RLPVYLVLTKADLLP  270 (1188)
T ss_pred             CCCEEEEEECCCCCC
T ss_conf             776389986210021