HHsearch alignment for GI: 254780711 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=96.52 E-value=0.027 Score=37.79 Aligned_cols=91 Identities=24% Similarity=0.266 Sum_probs=58.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH---------HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 899623443334688999999998---------614895078205422100477999985103474222-----------
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLK---------TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE----------- 161 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~---------~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~----------- 161 (461)
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G 170 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG 170 (402)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf 58984488623768999999999864777453355888079998226868899999999987099857632200002456
Q ss_pred CCCCCHHH--HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 33210368--99999999997415886998334
Q gi|254780711|r 162 VIPEQSPE--KIAIRATQSARDGGYDAVILDTA 192 (461)
Q Consensus 162 ~~~~~dp~--~i~~~a~~~a~~~~~D~iiiDTa 192 (461)
T Consensus 171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~ 203 (402)
T COG3598 171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF 203 (402)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf 787200105899999999998747874997344