HHsearch alignment for GI: 254780711 and conserved domain: COG3598

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=96.52  E-value=0.027  Score=37.79  Aligned_cols=91  Identities=24%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHH---------HHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf             899623443334688999999998---------614895078205422100477999985103474222-----------
Q gi|254780711|r  102 VIMLVGLQGSGKTTTTAKIAYHLK---------TLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE-----------  161 (461)
Q Consensus       102 vIllvGl~GsGKTTT~aKLA~~~~---------~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~-----------  161 (461)
T Consensus        91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~G  170 (402)
T COG3598          91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVSG  170 (402)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHEECCCCCC
T ss_conf             58984488623768999999999864777453355888079998226868899999999987099857632200002456


Q ss_pred             CCCCCHHH--HHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             33210368--99999999997415886998334
Q gi|254780711|r  162 VIPEQSPE--KIAIRATQSARDGGYDAVILDTA  192 (461)
Q Consensus       162 ~~~~~dp~--~i~~~a~~~a~~~~~D~iiiDTa  192 (461)
T Consensus       171 aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~  203 (402)
T COG3598         171 AADESDVLSPKLYRRFEKILEQKRPDFVVIDPF  203 (402)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCH
T ss_conf             787200105899999999998747874997344