HHsearch alignment for GI: 254780711 and conserved domain: PRK00091
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.
Probab=96.05 E-value=0.024 Score=38.17 Aligned_cols=156 Identities=24% Similarity=0.313 Sum_probs=71.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC-----------CCCHHHHHHHHHHHCCCCCCCCCCC---
Q ss_conf 84189962344333468899999999861489507820542-----------2100477999985103474222332---
Q gi|254780711|r 99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV-----------HRPAAQEQLRYLGEQIQVDTLEVIP--- 164 (461)
Q Consensus 99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt-----------~R~aA~eQL~~~a~~~~v~~~~~~~--- 164 (461)
T Consensus 3 ~~~ii~i~GpTasGKs~la~~la~~~------~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~H--hli~~~~~~e~~s 74 (304)
T PRK00091 3 KPKLIVLVGPTASGKTALAIELAKRL------NGEIISVDSMQVYRGMDIGTAKPTAEELAGVPH--HLIDILDPTESYS 74 (304)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC------CCEEEEECHHHHHCCCCEEECCCCHHHHCCCCC--EEEEEECCCCCEE
T ss_conf 99779998988658999999999987------998994126887499986889999999818981--2434565887544
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH-----HHHHHH
Q ss_conf 103689999999999741588699833442221124689999998513851100031011122568888-----988763
Q gi|254780711|r 165 EQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA-----RNFDKI 239 (461)
Q Consensus 165 ~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a-----~~F~~~ 239 (461)
T Consensus 75 v~~f~~~a~~~i~~i~~~~kiPIiV--GGTglYl~aLl~g~~~~-----p~-----~~~~ir~~l~~~~~~~g~~~l~~~ 142 (304)
T PRK00091 75 AADFQRDALAAIEDITARGKLPILV--GGTGLYFKALLEGLSFL-----PP-----ADPEVRAELEALAAEEGWEALHAE 142 (304)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEE--CCCHHHHHHHHCCCCCC-----CC-----CCHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 9999999999999999769987898--08389999997187778-----88-----898999999999997589999999
Q ss_pred -CCCCCEEEEECCC--CCCCCHHHHHHHHHCCCHHHEE
Q ss_conf -5844077641157--6633036777888478730261
Q gi|254780711|r 240 -VDLTGIILTRMDG--DGRGGAALSMRTVTGKPIKAIG 274 (461)
Q Consensus 240 -~~i~giIlTKlD~--~akgG~als~~~~~~~PI~fig 274 (461)
T Consensus 143 L~~~Dp~~a~~I~~nd~~Rl~RAlEv~~~tGk~~s~~~ 180 (304)
T PRK00091 143 LAEIDPVAAARIHPNDPQRIIRALEVYELTGKPLSELQ 180 (304)
T ss_pred HHHHCHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 98759999961598612679999999999799789985