HHsearch alignment for GI: 254780711 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=100.00 E-value=0 Score=1095.14 Aligned_cols=429 Identities=38% Similarity=0.583 Sum_probs=407.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
T Consensus 2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~ 81 (433)
T PRK00771 2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE 81 (433)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 76889899999999861899889999999999999999965678799999999999997146245789989999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
T Consensus 82 eL~~llg~~~~~~----~kP~Vim~vGlqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 82 ELVKLLGEEAEIL----LKPQTILLVGLQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHCCCCCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999849676566----89858999737889789999999999997-799467850678836899999999986388731
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~ 234 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKAFKEAV 234 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 78899999999999999845--6988999776521040999999999987757976899865442267899999998753
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
T Consensus 235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~-~~~~ 313 (433)
T PRK00771 235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEA-EEDV 313 (433)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf 887379972567887305421898878995688617872148866808899987089858999999998755999-9999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf 65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r 321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK 400 (461)
Q Consensus 321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~ 400 (461)
T Consensus 314 ~k~~~g~F~l~Df~~Q~~~i~kmG~~~~il~miPg~~~~~~~-~~~~~~e~~~k~~~aII~SMT~~Er~~p~ii~~SR~~ 392 (433)
T PRK00771 314 EAMMKGKFTLKDMYKQLEAMNKMGPLKQIMSMLPGGGGKLPD-EAIQVTEEKLKKYKVIMDSMTEEELENPEIINASRIK 392 (433)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf 987528856999999999998106899998638874210263-5553117888638479977999987394011658999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 97232667989999999999999999998606886201
Q gi|254780711|r 401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNAL 438 (461)
Q Consensus 401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~ 438 (461)
T Consensus 393 RIA~GSG~~v~eVn~Llkqf~~~~kmmk~~~k~~~~g~ 430 (433)
T PRK00771 393 RIARGSGVSPEEVRELLKYYKTMKNAMKGMKKGKMGGK 430 (433)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 97754998999999999999999999998568998888