HHsearch alignment for GI: 254780711 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=100.00  E-value=0  Score=1095.14  Aligned_cols=429  Identities=38%  Similarity=0.583  Sum_probs=407.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r    1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD   80 (461)
Q Consensus         1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~   80 (461)
T Consensus         2 mf~~Ls~~l~~~~~~l~g~~~l~E~~i~~~l~eIr~ALLeADV~~~vvk~f~~~vk~k~~g~~v~~~~~p~q~iikiv~~   81 (433)
T PRK00771          2 MLDKLGSSLKDALKKLAGATVIDKKTVKEVVKDIQRALLQADVNVKLVMNLSKEIERRALEEEPPKGMSKKEHIIKIVYE   81 (433)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             76889899999999861899889999999999999999965678799999999999997146245789989999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r   81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL  160 (461)
Q Consensus        81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~  160 (461)
T Consensus        82 eL~~llg~~~~~~----~kP~Vim~vGlqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~  156 (433)
T PRK00771         82 ELVKLLGEEAEIL----LKPQTILLVGLQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQLKQLCEKINVPFY  156 (433)
T ss_pred             HHHHHHCCCCCCC----CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             9999849676566----89858999737889789999999999997-799467850678836899999999986388731


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf             23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r  161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV  240 (461)
Q Consensus       161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~  240 (461)
T Consensus       157 ~~~~~~dp~~i~~~a~~~~k--~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~  234 (433)
T PRK00771        157 GDPKEKDAVKIVKEGLEKLK--KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAKAFKEAV  234 (433)
T ss_pred             CCCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             78899999999999999845--6988999776521040999999999987757976899865442267899999998753


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r  241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA  320 (461)
Q Consensus       241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~  320 (461)
T Consensus       235 ~i~gvIlTKlDgdarGGaaLSi~~~t~~PI~FiG~GEk~~dle~F~p~r~asRILGmGDi~sLvEk~~~~~~e~~-~~~~  313 (433)
T PRK00771        235 GIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGTGETIDDLEPFDPKRFISRLLGMGDLKSLLEKAEEVMDEEA-EEDV  313 (433)
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf             887379972567887305421898878995688617872148866808899987089858999999998755999-9999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHH
Q ss_conf             65310463799999999998511488999998731344234323111678888899999745898786084113357899
Q gi|254780711|r  321 KKIAKGKFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRKK  400 (461)
Q Consensus       321 ~k~~~g~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~~  400 (461)
T Consensus       314 ~k~~~g~F~l~Df~~Q~~~i~kmG~~~~il~miPg~~~~~~~-~~~~~~e~~~k~~~aII~SMT~~Er~~p~ii~~SR~~  392 (433)
T PRK00771        314 EAMMKGKFTLKDMYKQLEAMNKMGPLKQIMSMLPGGGGKLPD-EAIQVTEEKLKKYKVIMDSMTEEELENPEIINASRIK  392 (433)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHH
T ss_conf             987528856999999999998106899998638874210263-5553117888638479977999987394011658999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             97232667989999999999999999998606886201
Q gi|254780711|r  401 RIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNAL  438 (461)
Q Consensus       401 RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~  438 (461)
T Consensus       393 RIA~GSG~~v~eVn~Llkqf~~~~kmmk~~~k~~~~g~  430 (433)
T PRK00771        393 RIARGSGVSPEEVRELLKYYKTMKNAMKGMKKGKMGGK  430 (433)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             97754998999999999999999999998568998888