HHsearch alignment for GI: 254780711 and conserved domain: PRK05291
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed.
Probab=97.72 E-value=0.00021 Score=53.76 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
T Consensus 194 ~~l~~~i~~ll~~~~~g~~l~~--G~~v~i~G~PN~GKSSL~N~L~----~---~drAIVS------------------- 245 (445)
T PRK05291 194 EELIAELEKLLASAKQGELLRE--GLKVVIAGRPNVGKSSLLNALL----G---EERAIVT------------------- 245 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHH----C---CCCEEEC-------------------
T ss_conf 9999999999999874178635--9869988999876899999985----7---8746731-------------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCHHCCHHHHH
Q ss_conf 474222332103689999999999-74158869983344222112468999---99985138511000310111225688
Q gi|254780711|r 156 QVDTLEVIPEQSPEKIAIRATQSA-RDGGYDAVILDTAGRNHINDSLMQEI---SEIKSLTNPHEILLVADALTGQDAVH 231 (461)
Q Consensus 156 ~v~~~~~~~~~dp~~i~~~a~~~a-~~~~~D~iiiDTaGR~~~d~~lm~El---~~i~~~~~p~e~~lV~da~~Gq~a~~ 231 (461)
T Consensus 246 ~ip------GTT-----RD~ie~~l~l~G~~v~l~DTAGiR~t~-d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~ 313 (445)
T PRK05291 246 DIA------GTT-----RDVIEEHINLDGIPLRLIDTAGIRETE-DEVEKIGIERSRKAIEEADLVLLVLDASEPLTEED 313 (445)
T ss_pred CCC------CCC-----CCEEEEEEEECCEEEEEEECCCCCCCC-CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCH
T ss_conf 899------974-----040223689999899999899766557-45889999999999983999999987998887225
Q ss_pred HHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEE--CCCCCCCCCCCCHH
Q ss_conf 8898876358--440776411576633036777888478730261--58672321001368
Q gi|254780711|r 232 LARNFDKIVD--LTGIILTRMDGDGRGGAALSMRTVTGKPIKAIG--TGEKINDLENFFPD 288 (461)
Q Consensus 232 ~a~~F~~~~~--i~giIlTKlD~~akgG~als~~~~~~~PI~fig--~GE~~~dle~F~p~ 288 (461)
T Consensus 314 ~--~~~~~~~~~~~i~V~NK~DL~~~--------~~~~~~~i~iSak~g~Gi~~L~~~i~~ 364 (445)
T PRK05291 314 K--EILEEFKNKPVIVVLNKADLTGE--------KIDGLPVIRISAKTGEGIDELEEALKQ 364 (445)
T ss_pred H--HHHHHCCCCCEEEEEEHHHCCCC--------CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9--99985179987999851204665--------347897599983788699999999999