HHsearch alignment for GI: 254780711 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=95.96 E-value=0.055 Score=35.34 Aligned_cols=198 Identities=23% Similarity=0.304 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 6999999999999983031112699899999999999998718774--21000258841899623443334688999999
Q gi|254780711|r 45 LEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKES--IELDLNAPSPLVIMLVGLQGSGKTTTTAKIAY 122 (461)
Q Consensus 45 ~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~--~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~ 122 (461)
T Consensus 60 lp~P~eI~~~LD~yVIGQ~-----~AKk~lsVAvyNHykRi~~~~~~~~~vei---~KsNILliGPTG~GKTlla~tLAk 131 (411)
T PRK05342 60 LPTPKEIKAHLDQYVIGQE-----RAKKVLSVAVYNHYKRLRQNGSKSDDVEL---QKSNILLIGPTGSGKTLLAQTLAR 131 (411)
T ss_pred CCCHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHCCCCCCCCCCC---CCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 9997999998621402848-----88899999999999998602133566521---345389989999778899999999
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCH
Q ss_conf 99861489507820542210047799998510347422233210368999999999974----15886998334422211
Q gi|254780711|r 123 HLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD----GGYDAVILDTAGRNHIN 198 (461)
Q Consensus 123 ~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~----~~~D~iiiDTaGR~~~d 198 (461)
T Consensus 132 ~l----~vPF~iaDAT~lTEa------------------GYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~ID-------- 181 (411)
T PRK05342 132 IL----NVPFAIADATTLTEA------------------GYVGEDVENILLKLLQAADYDVEKAQRGIVYID-------- 181 (411)
T ss_pred HH----CCCEEEEEECEECCC------------------CCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEE--------
T ss_conf 86----999899861200126------------------745607999999999982888998836828885--------
Q ss_pred HHHHHHHHHHHHHC-CCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH---HHHHHCCCHHHEE
Q ss_conf 24689999998513-8511000310111225688889887635844077641157663303677---7888478730261
Q gi|254780711|r 199 DSLMQEISEIKSLT-NPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALS---MRTVTGKPIKAIG 274 (461)
Q Consensus 199 ~~lm~El~~i~~~~-~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als---~~~~~~~PI~fig 274 (461)
T Consensus 182 -----EIDKIarks~~~s~t---rDV--SgEGVQqa--LLkii--EGt~v~---vp~~ggrkhp~~~~~~idT~nILFI~ 244 (411)
T PRK05342 182 -----EIDKIARKSENPSIT---RDV--SGEGVQQA--LLKIL--EGTVAS---VPPQGGRKHPQQEFIQVDTTNILFIC 244 (411)
T ss_pred -----EHHHHHHCCCCCCCC---CCC--CCHHHHHH--HHHHH--CCCEEC---CCCCCCCCCCCCCEEEEECCCEEEEE
T ss_conf -----023454247888887---776--51248999--99987--587141---18887777877651676147179991
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 586723210013688998773586
Q gi|254780711|r 275 TGEKINDLENFFPDRIANRILGMG 298 (461)
Q Consensus 275 ~GE~~~dle~F~p~~~~~riLGmg 298 (461)
T Consensus 245 gGA-F~GL~~II~~R~~~~~iGF~ 267 (411)
T PRK05342 245 GGA-FDGLEKIIKQRLGKSGIGFG 267 (411)
T ss_pred CCC-CCCHHHHHHHHCCCCCCCCC
T ss_conf 155-33589999863578876778