HHsearch alignment for GI: 254780711 and conserved domain: PRK05648
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed.
Probab=97.19 E-value=0.0023 Score=45.86 Aligned_cols=218 Identities=19% Similarity=0.184 Sum_probs=89.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA 172 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~ 172 (461)
T Consensus 36 ~~~~a~l~~g~rg~gkt~~ar~~ak~lnc~~~~~~~pc~~c~~--------c~~i~~~~~~d~~e~d~as~~~v~~~r~~ 107 (705)
T PRK05648 36 RLHHAYLFTGTRGVGKTTIARIIAKCLNCETGVSSTPCGECSV--------CREIDEGRFVDLIEVDAASRTKVEDTREL 107 (705)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 8630465007898889899999999867789998897877600--------46662489776344515544788999999
Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf 99999997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r 173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD--------- 237 (461)
Q Consensus 173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~--------- 237 (461)
T Consensus 108 ~~~~~~~p~~~~~kv~~idevhmls~~--~fnallktleep-p~~v~f~~-att~~~k~p~t~~src~~~~~~~~~~~~~ 183 (705)
T PRK05648 108 LDNVQYAPTRGRYKVYLIDEVHMLSSH--SFNALLKTLEEP-PPHVKFLL-ATTDPQKLPVTILSRCLQFSLKNMSPERV 183 (705)
T ss_pred HHHCCCCCCCCCEEEEEEEHHHHCCHH--HHHHHHHHCCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 985551776774579998426541799--999998740479-75459998-42873537589997664302368999999
Q ss_pred ----------HHCCCCCEEEEECCCCCCCC--HHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
Q ss_conf ----------63584407764115766330--367778884787302615867232100136889987735862788999
Q gi|254780711|r 238 ----------KIVDLTGIILTRMDGDGRGG--AALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVE 305 (461)
Q Consensus 238 ----------~~~~i~giIlTKlD~~akgG--~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e 305 (461)
T Consensus 184 ~~~l~~~~~~e~~~~~~~~~~~~~~~~~g~~rd~ls~~dq---~~~~-~~~-~~~-------~~~v~~mlg~~~~~~~~~ 251 (705)
T PRK05648 184 VEHLSHVLGAENVPFEEDALWLLGRAADGSMRDAMSLTDQ---AIAF-GEG-KVL-------AADVRAMLGTLDHGQVYG 251 (705)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHHH
T ss_conf 9999999997599778999999999748967779999999---9860-688-407-------999999858887789999
Q ss_pred HHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 874211267899--8886531046379999999999
Q gi|254780711|r 306 KAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 306 ~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
T Consensus 252 l~~a~~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~~ 287 (705)
T PRK05648 252 VLQALLEGDARALLEAVRHLAEQGPDWNGVLAEMLN 287 (705)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999568999999999999858899999999999