HHsearch alignment for GI: 254780711 and conserved domain: PRK05896
>PRK05896 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.64 E-value=0.005 Score=43.32 Aligned_cols=219 Identities=14% Similarity=0.132 Sum_probs=113.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHH
Q ss_conf 58841899623443334688999999998614895-0782054221004779999851034742223321-036899999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPE-QSPEKIAIR 174 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~-~dp~~i~~~ 174 (461)
T Consensus 35 ~RiaHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC--------~~I~~g~h~DviEIdaasn~gIDeIRe 106 (613)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC--------ESINTNQSVDIVELDAASNNGVDEIRN 106 (613)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH--------HHHHCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 997622775589984889999999999669999999988888789--------998569999868840655578899999
Q ss_pred HHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHH----HHHH---------
Q ss_conf 999997----41588699833442221124689999998513851100031011122568888----9887---------
Q gi|254780711|r 175 ATQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLA----RNFD--------- 237 (461)
Q Consensus 175 a~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a----~~F~--------- 237 (461)
T Consensus 107 Lie~~~~~P~~gkyKV~IIDEah~Ln~~Aa--NALLKtLEEP-P~~viFIL~Ttep~KLLpTIlSRCQrf~Fkri~~~~I 183 (613)
T PRK05896 107 IIDNINYLPTTFKYKVYIIDEAHMLSTSAW--NALLKTLEEP-PKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSEL 183 (613)
T ss_pred HHHHHCCCCCCCCCEEEEECCHHHCCHHHH--HHHHHHCCCC-CCCCEEEEEECCHHHCCHHHHHCCCCEECCCCCHHHH
T ss_conf 999708587579945999816221799999--9999853489-8783799982881549376640355001788998999
Q ss_pred ----------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------635844----077641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 184 ~~~L~~I~~kE~i~ie~~AL~~Ia~~adGs~R--DAlslLdQ---~~~~-~-~~~it-------~~~v~~~~g~~~~~~~ 249 (613)
T PRK05896 184 QELLKSIAKKEKIKIEDNAIDKIADLADGSLR--DGLSILDQ---LSTF-K-NKKID-------IEDINKTFGLVDNNKK 249 (613)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-C-CCCCC-------HHHHHHHHCCCCHHHH
T ss_conf 99999999973998789999999997688487--89889999---9983-5-68862-------9999999677768999
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 99874211267--89988865310463799999999998
Q gi|254780711|r 304 VEKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQT 340 (461)
Q Consensus 304 ~e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~i 340 (461)
T Consensus 250 ~~~~~~i~~~d~~~~~~~~~~~~~~g~~~~~~~~~li~~ 288 (613)
T PRK05896 250 INLIELIQKNDIEELRNLINELESKGINFEAFCRDLINL 288 (613)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999999985589999999999998067899999999999