HHsearch alignment for GI: 254780711 and conserved domain: PRK06647

>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.71  E-value=0.0035  Score=44.46  Aligned_cols=219  Identities=11%  Similarity=0.093  Sum_probs=116.7

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf             5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA  175 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a  175 (461)
T Consensus        35 ~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~--~~~PCg~C-----~sC~~i~~g~~~DviEidaasn~~VddIR~l  107 (560)
T PRK06647         35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP--TIMPCGEC-----FSCKSIDNDSSLDVIEIDGASNTSVQDVRQI  107 (560)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCC-----HHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             9977436632899878999999999996599999--98888788-----7888874599987576436454888999999


Q ss_pred             HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC-----------
Q ss_conf             99997----415886998334422211246899999985138511000310111225688889887635-----------
Q gi|254780711|r  176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV-----------  240 (461)
Q Consensus       176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~-----------  240 (461)
T Consensus       108 ~e~v~~~P~~~~yKV~IIDEahmLt~~A--~NALLKtLEEP-P~~~~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~  184 (560)
T PRK06647        108 KEEIMFPPASSRYRVYIIDEVHMLSNSA--FNALLKTIEEP-PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIY  184 (560)
T ss_pred             HHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHH
T ss_conf             9986328766870699964656559999--99999986348-87559999779947684899965104105559999999


Q ss_pred             ------------CCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf             ------------844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r  241 ------------DLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV  304 (461)
Q Consensus       241 ------------~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~  304 (461)
T Consensus       185 ~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~R--Dalslldq---~i~~-~~~-~i~-------~~~v~~~lG~~~~~~~~  250 (560)
T PRK06647        185 EMLKKVCLEDDIKYEDEALKWIAYKSGGSVR--DAYTLFDQ---IVSF-SNS-DIT-------LEQIRSKMGLTSDEFLE  250 (560)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf             9999999867988799999999997789588--89999999---9960-799-778-------99999986898889999


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9874211267--8998886531046379999999999
Q gi|254780711|r  305 EKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQ  339 (461)
Q Consensus       305 e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~  339 (461)
T Consensus       251 ~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~  287 (560)
T PRK06647        251 KLSSSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIE  287 (560)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             9999999469999999999999809999999999999