HHsearch alignment for GI: 254780711 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.71 E-value=0.0035 Score=44.46 Aligned_cols=219 Identities=11% Similarity=0.093 Sum_probs=116.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 5884189962344333468899999999861489507820542210047799998510347422233210-368999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
T Consensus 35 ~rl~HAyLFsGprG~GKTt~ArilAk~LnC~~~~--~~~PCg~C-----~sC~~i~~g~~~DviEidaasn~~VddIR~l 107 (560)
T PRK06647 35 NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP--TIMPCGEC-----FSCKSIDNDSSLDVIEIDGASNTSVQDVRQI 107 (560)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCC-----HHHHHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9977436632899878999999999996599999--98888788-----7888874599987576436454888999999
Q ss_pred HHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC-----------
Q ss_conf 99997----415886998334422211246899999985138511000310111225688889887635-----------
Q gi|254780711|r 176 TQSAR----DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV----------- 240 (461)
Q Consensus 176 ~~~a~----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~----------- 240 (461)
T Consensus 108 ~e~v~~~P~~~~yKV~IIDEahmLt~~A--~NALLKtLEEP-P~~~~FILaTte~~KI~~TI~SRCQ~f~Fk~i~~~~I~ 184 (560)
T PRK06647 108 KEEIMFPPASSRYRVYIIDEVHMLSNSA--FNALLKTIEEP-PPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIY 184 (560)
T ss_pred HHHHCCCCCCCCEEEEEECCHHHCCHHH--HHHHHHHHHCC-CCCEEEEEECCCHHHCHHHHHHHHEEEECCCCCHHHHH
T ss_conf 9986328766870699964656559999--99999986348-87559999779947684899965104105559999999
Q ss_pred ------------CCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf ------------844----0776411576633036777888478730261586723210013688998773586278899
Q gi|254780711|r 241 ------------DLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLV 304 (461)
Q Consensus 241 ------------~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~ 304 (461)
T Consensus 185 ~~L~~I~~~E~i~~e~~AL~lIa~~a~Gs~R--Dalslldq---~i~~-~~~-~i~-------~~~v~~~lG~~~~~~~~ 250 (560)
T PRK06647 185 EMLKKVCLEDDIKYEDEALKWIAYKSGGSVR--DAYTLFDQ---IVSF-SNS-DIT-------LEQIRSKMGLTSDEFLE 250 (560)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHC-CCC-CCC-------HHHHHHHHCCCCHHHHH
T ss_conf 9999999867988799999999997789588--89999999---9960-799-778-------99999986898889999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9874211267--8998886531046379999999999
Q gi|254780711|r 305 EKAARNLNEK--QAALTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 305 e~~~~~~d~~--~~~~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
T Consensus 251 ~l~~~i~~~d~~~~l~~~~~i~~~G~d~~~fl~~li~ 287 (560)
T PRK06647 251 KLSSSILNKDLKELLCVLDAIFLSGVSVEQFLLDCIE 287 (560)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999469999999999999809999999999999