HHsearch alignment for GI: 254780711 and conserved domain: PRK06749
>PRK06749 replicative DNA helicase; Provisional.
Probab=95.74 E-value=0.23 Score=30.60 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=72.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHHHCCCCCCCCCCCCC------HHHHH
Q ss_conf 4189962344333468899999999861489507820542210047799--998510347422233210------36899
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQL--RYLGEQIQVDTLEVIPEQ------SPEKI 171 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL--~~~a~~~~v~~~~~~~~~------dp~~i 171 (461)
T Consensus 186 g~LiviaaRPsmGKTa~alnia~~~a~-~g~~v~~fSlEMs----~~~l~~R~ls~~s~v~~~~i~~~~~~~~~~~~~~~ 260 (428)
T PRK06749 186 GDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMS----SKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKV 260 (428)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC----HHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
T ss_conf 868999627989768999999999996-4992799837899----99999999997549988886277677999999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999999974158869983344222112468999999851385110003101
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
T Consensus 261 -~~a~~~l--~~~~l~i~d~~~~ti~--~i~~~~r~~~~~~g~~~~livIDY 307 (428)
T PRK06749 261 -SKAFAEI--GELPLEIYDNAGVTVQ--DIWMQTRKLKRKHGDKKVLIIVDY 307 (428)
T ss_pred -HHHHHHH--HCCCEEEECCCCCCHH--HHHHHHHHHHHHCCCCCEEEEEEH
T ss_conf -9999998--5596599758997679--999999999997499876999767