HHsearch alignment for GI: 254780711 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.19 E-value=0.0086 Score=41.52 Aligned_cols=214 Identities=15% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC-HHHHHHHHH
Q ss_conf 8841899623443334688999999998614895-07820542210047799998510347422233210-368999999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQ-SPEKIAIRA 175 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~-dp~~i~~~a 175 (461)
T Consensus 36 rl~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~--------C~~i~~g~~~d~iEiDaAS~~~vd~~r~l 107 (816)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA--------CREIDEGRFVDYVEMDAASNRGVDEMAAL 107 (816)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 8631475117898888899999999867899999897877555--------78775588775478635543576899999
Q ss_pred ---HHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH---------
Q ss_conf ---99997-4158869983344222112468999999851385110003101112-25----688889887---------
Q gi|254780711|r 176 ---TQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD--------- 237 (461)
Q Consensus 176 ---~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~--------- 237 (461)
T Consensus 108 ~~~~~y~p~~~r~KvyiiDEvHmls~~--afnalLKtlEep-P~hv~Fil-aTTd~~k~p~tilSRc~~f~l~~~~~~~i 183 (816)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183 (816)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 986224786674479998415433999--999999840379-86648999-55880115288987776522367999999
Q ss_pred ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 184 ~~~l~~i~~~E~i~~e~~al~lia~~a~GsmR--Dalsl~dQ---aia~-~~g~~~--------~~~v~~mLG~~d~~~~ 249 (816)
T PRK07003 184 VSHLERILGEERIAFEPQALRLLARAAQGSMR--DALSLTDQ---AIAY-SANEVT--------ETAVSGMLGALDQTYM 249 (816)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999982997799999999997677378--88859999---9984-699737--------9999998588877899
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998742112678--9988865310463799999999
Q gi|254780711|r 304 VEKAARNLNEKQ--AALTAKKIAKGKFDLEDLAEQF 337 (461)
Q Consensus 304 ~e~~~~~~d~~~--~~~l~~k~~~g~F~l~Df~~Ql 337 (461)
T Consensus 250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l 285 (816)
T PRK07003 250 VRLLDALAAADGPEILAIADEMSLRSLSFSTALQDL 285 (816)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999995589999999999998688999999999