HHsearch alignment for GI: 254780711 and conserved domain: PRK08116

Probab=97.82  E-value=0.0003  Score=52.68  Aligned_cols=137  Identities=20%  Similarity=0.261  Sum_probs=81.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
T Consensus       107 ~~~GLll~G~~GtGKThLa~aIa~~l~~-~g~~V~~~~~~~l----l~~lk~~--------~~~~~~~~~~e----~l~~  169 (262)
T PRK08116        107 ESVGLLLWGSPGNGKTYLAAAIANELIE-KGVPVVFVNVPEL----LNRIKST--------YNSEGKEDENE----IIRA  169 (262)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEHHHH----HHHHHHH--------HHCCCCHHHHH----HHHH
T ss_conf             6861899898999899999999999998-7993999889999----9999999--------86356101999----9998


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf             97415886998334422211246899999985138511000310111225688889887635844077641157663303
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGA  258 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~  258 (461)
T Consensus       170 l--~~~dLLIiDDlG~e~~t~w~~e~lf~---------------------------------------------------  196 (262)
T PRK08116        170 L--DNADLLILDDLGAEKDTEWVREKLYN---------------------------------------------------  196 (262)
T ss_pred             H--HCCCEEEEEHHCCCCCCHHHHHHHHH---------------------------------------------------
T ss_conf             6--12998998322145698789999999---------------------------------------------------


Q ss_pred             HHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf             677788847873026158672321001368899877358627889998
Q gi|254780711|r  259 ALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEK  306 (461)
Q Consensus       259 als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~  306 (461)
T Consensus       197 IIn~Ry~~~kptIiTT-Nl~~~eL~~~~~~Ri~sRl~e~~~~v~~~G~  243 (262)
T PRK08116        197 IIDSRYRKGLPTIFTT-NLSLEELKNQYGKRTYSRILEMCTPVKNEGK  243 (262)
T ss_pred             HHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf             9999997699989987-9999999998637999999867789985177