HHsearch alignment for GI: 254780711 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=98.20 E-value=7.8e-05 Score=57.11 Aligned_cols=192 Identities=19% Similarity=0.218 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999871877421000258841899623443334688999999998614895078205422100477999985103
Q gi|254780711|r 76 KIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQI 155 (461)
Q Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~ 155 (461)
T Consensus 7 ~~~~d~ld~~lggGi-------p~gs~~li~G~~GtGKsi~~~~~~~~~l~-~g~~~~yis~e~t~~~~i~qm~s~g~di 78 (230)
T PRK08533 7 ELDGDELHKRLGGGI-------PFGSIILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSSQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred ECCCHHHHHHHCCCC-------CCCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 057135788717898-------89848999868998789999999999987-8986999994389999999999869981
Q ss_pred ----------CCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCEEEEECCCCC-CC--HH----HHHHHHHHHHHHCCCCCC
Q ss_conf ----------47422233210-36899999999997415886998334422-21--12----468999999851385110
Q gi|254780711|r 156 ----------QVDTLEVIPEQ-SPEKIAIRATQSARDGGYDAVILDTAGRN-HI--ND----SLMQEISEIKSLTNPHEI 217 (461)
Q Consensus 156 ----------~v~~~~~~~~~-dp~~i~~~a~~~a~~~~~D~iiiDTaGR~-~~--d~----~lm~El~~i~~~~~p~e~ 217 (461)
T Consensus 79 ~~~~~~G~l~~i~~~~~~~~~~~~~~~L~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gk--tI 156 (230)
T PRK08533 79 NKKLISGKLLYIPVYPLLSGNSEKRDFLDKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNK--VI 156 (230)
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCC--EE
T ss_conf 7997579679996134335404578999999732664379899990531885167778999999999999985898--89
Q ss_pred CCCCCHH-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH
Q ss_conf 0031011-1225688889887635844077641157663303677788847873026158672321001368
Q gi|254780711|r 218 LLVADAL-TGQDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPD 288 (461)
Q Consensus 218 ~lV~da~-~Gq~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~ 288 (461)
T Consensus 157 ilTv~p~~~~e~~l~~---lrs--~aDv~i~L~~~~--vGg~~~r~i~----V~K~~ga~~~~~~~I~F~V~ 217 (230)
T PRK08533 157 ILTANPKELPESVLLI---LRT--ASTILIRLEVKV--FGGDLKNSAK----IVKYNMAKGSFQKIIPFRVE 217 (230)
T ss_pred EEEECCCCCCHHHHHH---HHE--EEEEEEEEEEEE--CCCEEEEEEE----EEEECCCCCCCCCEEEEEEC
T ss_conf 9995633136245442---041--048999987361--0988999999----99844898777864789980