HHsearch alignment for GI: 254780711 and conserved domain: PRK08853
>PRK08853 DNA polymerase III subunits gamma and tau; Validated.
Probab=96.84 E-value=0.063 Score=34.92 Aligned_cols=215 Identities=18% Similarity=0.206 Sum_probs=94.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHHHH
Q ss_conf 8841899623443334688999999998614895-0782054221004779999851034742223----3210368999
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKK-ILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEKIA 172 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~k-V~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~i~ 172 (461)
T Consensus 36 rl~haylf~G~rGvGKTt~ARi~Ak~lNC~~~~~~~pcg~C~~C--------~~i~~g~~~d~~EiDaAs~~~vdd~rel 107 (717)
T PRK08853 36 RLHHAYLFSGTRGVGKTTIGRLFAKGLNCETGITSTPCGQCATC--------KEIDEGRFVDLLEIDAASRTKVEDTREL 107 (717)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--------HHHHCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 97405761088988898999999998678999999978887026--------7674478775245405656788999999
Q ss_pred HHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-----HHHHHHHHH---------
Q ss_conf 99999997-415886998334422211246899999985138511000310111225-----688889887---------
Q gi|254780711|r 173 IRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-----AVHLARNFD--------- 237 (461)
Q Consensus 173 ~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-----a~~~a~~F~--------- 237 (461)
T Consensus 108 ~~~~~y~p~~~~yKvyiiDEvHmls~~a--fnAlLKtlEEP-P~hv~Fil-aTT~~~kip~TilSRc~~f~l~~~~~~~i 183 (717)
T PRK08853 108 LDNVQYKPARGRFKVYLIDEVHMLSRHS--FNALLKTLEEP-PEYVKFLL-ATTDPQKLPVTILSRCLQFHLKPISVDQI 183 (717)
T ss_pred HHHCCCCCCCCCEEEEEEECHHHCCHHH--HHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCCCHHHH
T ss_conf 9855548877854799983054438999--99998760378-75648998-43873437388987654423268999999
Q ss_pred ----------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf ----------6358440----77641157663303677788847873026158672321001368899877358627889
Q gi|254780711|r 238 ----------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 238 ----------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 184 ~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--dalsl~dq---aia~-~~g~~~--------~~~v~~mlg~~d~~~~ 249 (717)
T PRK08853 184 HQQLDFVLDKEQVSAEARALGLIAHAADGSMR--DALSLTDQ---AIAL-GNGQVT--------TDIVSHMLGTLDTDQA 249 (717)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHHH---HHHH-CCCCCC--------HHHHHHHHCCCCHHHH
T ss_conf 99999999975987699999999997688377--88889999---9996-589716--------9999998588877899
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99874211267899--888653104637999999999
Q gi|254780711|r 304 VEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFR 338 (461)
Q Consensus 304 ~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~ 338 (461)
T Consensus 250 ~~ll~al~~~d~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (717)
T PRK08853 250 IHLLEAISSKQPQTAMDCIQQLADNGVEWDGLLQQLA 286 (717)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999955899999999999986889999999999