HHsearch alignment for GI: 254780711 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.77 E-value=0.0067 Score=42.33 Aligned_cols=220 Identities=20% Similarity=0.250 Sum_probs=114.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH--CC-CCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC----CCCCHHHH
Q ss_conf 884189962344333468899999999861--48-950782054221004779999851034742223----32103689
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTL--KK-KKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV----IPEQSPEK 170 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~--~~-~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~----~~~~dp~~ 170 (461)
T Consensus 43 ~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~-----c~~c~~i~~~~~~d~~e~daas~~~v~~~r 117 (600)
T PRK09111 43 RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGV-----GEHCQAIMEGRHVDVIEMDAASHTGVDDIR 117 (600)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 842047645789878999999999996698876668998898998-----865898866899875885155457888999
Q ss_pred HHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HH----HHHHHHHHH-------
Q ss_conf 9999999997-4158869983344222112468999999851385110003101112-25----688889887-------
Q gi|254780711|r 171 IAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QD----AVHLARNFD------- 237 (461)
Q Consensus 171 i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~----a~~~a~~F~------- 237 (461)
T Consensus 118 ~~~~~~~~~p~~~~~kv~iidevhmls~~a--fnallktleep-p~~~~fi~-att~~~k~p~ti~src~~f~~~~~~~~ 193 (600)
T PRK09111 118 EIIESVRYRPVSARYKVYIIDEVHMLSTAA--FNALLKTLEEP-PPHVKFIF-ATTEIRKVPVTVLSRCQRFDLRRIEAE 193 (600)
T ss_pred HHHHHHCCCCCCCCEEEEEEECCCCCCHHH--HHHHHHHHHCC-CCCEEEEE-ECCCHHHCCHHHHHHHHEECCCCCCHH
T ss_conf 999860538877754699960011057999--99999876259-86549999-628534375899854412010579999
Q ss_pred ------------HHCCCC----CEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHH
Q ss_conf ------------635844----0776411576633036777888478730261586723210013688998773586278
Q gi|254780711|r 238 ------------KIVDLT----GIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVV 301 (461)
Q Consensus 238 ------------~~~~i~----giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~ 301 (461)
T Consensus 194 ~~~~~l~~i~~~e~~~~~~~al~~ia~~a~GS~R--DaLSlLDQa---i~~-~~~-~i~-------~~~v~~mLGl~d~~ 259 (600)
T PRK09111 194 VLAAHLARIAEKEGVEVEPDALALIARAAEGSVR--DGLSLLDQA---IAH-GAG-EVT-------AEQVRDMLGLADRA 259 (600)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCC--HHHHHHHHH---HHC-CCC-CCC-------HHHHHHHHCCCCHH
T ss_conf 9999999999860768667799999997489842--189999999---972-798-756-------99999986887677
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCH----HHHHHHHHHH
Q ss_conf 89998742112678--998886531046379----9999999998
Q gi|254780711|r 302 SLVEKAARNLNEKQ--AALTAKKIAKGKFDL----EDLAEQFRQT 340 (461)
Q Consensus 302 ~l~e~~~~~~d~~~--~~~l~~k~~~g~F~l----~Df~~Ql~~i 340 (461)
T Consensus 260 ~i~~Ll~~i~~Gd~~~aL~~~~~l~~~G~Dp~~iL~dLLeilh~i 304 (600)
T PRK09111 260 RVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLRDLAEFVHLV 304 (600)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 899999999855868899999999985989999999999999999