HHsearch alignment for GI: 254780711 and conserved domain: PRK10436

Probab=96.46  E-value=0.0053  Score=43.13  Aligned_cols=208  Identities=17%  Similarity=0.105  Sum_probs=94.9

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             18996234433346889999999986148950782054--2210047799998510347422233210368999999999
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLD--VHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~D--t~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
T Consensus       216 GliLvtGPTGSGKTTTLya~L~~l~~-~~~~I~TiE-DPVE~~l~gi~Q~~vn~----------~~g~tfa----~~lrs  279 (461)
T PRK10436        216 GLVLVTGPTGSGKTVTLYSALQTLNT-AQINICSVE-DPVEIPLAGINQTQIHP----------RAGLTFQ----RVLRA  279 (461)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCC-CCCEEEEEE-CCCCCCCCCCCCCEECC----------CCCHHHH----HHHHH
T ss_conf             77999789999569999999974346-771699960-77435546754523132----------2131399----99999


Q ss_pred             HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHCC---------CCCEEEEE
Q ss_conf             974158869983344222112468999999851385110003101112256888898876358---------44077641
Q gi|254780711|r  179 ARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIVD---------LTGIILTR  249 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~~---------i~giIlTK  249 (461)
T Consensus       280 ~LRqDPDVImvGEIR----D~eTA~--~Ai~AAlTG---HLVlsTlHtnda~~ai~RL~~-mgi~~~lla~~L~~ViaQR  349 (461)
T PRK10436        280 LLRQDPDVIMVGEIR----DGETAE--IAIKAAQTG---HLVLSTLHTNSTSETLIRLQQ-MGVARWMISSALTLVIAQR  349 (461)
T ss_pred             HHCCCCCEEEECCCC----CHHHHH--HHHHHHHHC---CEEEEEECCCCHHHHHHHHHH-CCCCHHHHHHHHHHEEECC
T ss_conf             874699999865778----899999--999999719---848898626977889999998-3998889998663347750


Q ss_pred             C----CCCCC-------------CCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHH-HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             1----57663-------------303677788847873026158672321001368-89987735862788999874211
Q gi|254780711|r  250 M----DGDGR-------------GGAALSMRTVTGKPIKAIGTGEKINDLENFFPD-RIANRILGMGDVVSLVEKAARNL  311 (461)
Q Consensus       250 l----D~~ak-------------gG~als~~~~~~~PI~fig~GE~~~dle~F~p~-~~~~riLGmgD~~~l~e~~~~~~  311 (461)
T Consensus       350 LVR~LCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~tGY~GR~~i~Evl~~d~~ir~~I~~~~~~~~i~~~a~~~G  429 (461)
T PRK10436        350 LVRKLCPHCRQQQSEPVHLPANIWPSPLPHWQAVGCEHCYHGFYGRTALFEVLPVTPAIRQLIASNASPEELETHARQQG  429 (461)
T ss_pred             CCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             34323733278667542101330434332025788733389988601899998389999999983999999999999869


Q ss_pred             HHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             26789988865310463799999
Q gi|254780711|r  312 NEKQAALTAKKIAKGKFDLEDLA  334 (461)
Q Consensus       312 d~~~~~~l~~k~~~g~F~l~Df~  334 (461)
T Consensus       430 m~tl~~~g~~kv~~G~Ts~eEv~  452 (461)
T PRK10436        430 MTTLFENGCLAVEQGLTTLEEII  452 (461)
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             92299999999985999899999