HHsearch alignment for GI: 254780711 and conserved domain: PRK10463
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional.
Probab=97.66 E-value=0.00044 Score=51.35 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=96.7
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH---HHHH
Q ss_conf 0258841899623443334688999999998614895078205422100477999985103474222332103---6899
Q gi|254780711|r 95 LNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQS---PEKI 171 (461)
Q Consensus 95 ~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~d---p~~i 171 (461)
T Consensus 99 f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~--~~~~aVIeGD~~T~~DA~RI~~----~Gv~avQInTG~~CHLDA~M 172 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKD--SVPCAVIEGDQQTVNDAARIRA----TGTPAIQVNTGKGCHLDAQM 172 (290)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHH----CCCCEEEECCCCCCCCCHHH
T ss_conf 99879189993069987889999999998733--6757999604235667999997----69958995479976759999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHH-HHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 999999997415886998334422211246899999985138511000310111225-6888898876358440776411
Q gi|254780711|r 172 AIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQD-AVHLARNFDKIVDLTGIILTRM 250 (461)
Q Consensus 172 ~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~-a~~~a~~F~~~~~i~giIlTKl 250 (461)
T Consensus 173 V~~al~~l~l~~~dllfIENVGNLVCPA~--------FD-LGE~~kVvvlSVtEGeDKPlKYP~mF~~a---d~vlinKi 240 (290)
T PRK10463 173 IADAAPRLPLDDNGILFIENVGNLVCPAS--------FD-LGEKHKVAVLSVTEGEDKPLKYPHMFAAA---SLMLLNKV 240 (290)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCC--------CC-CCCCEEEEEEEECCCCCCCCCCHHHHHHC---CEEEEEHH
T ss_conf 99999848987798999812788435512--------03-67761799997068888644476676425---78998656
Q ss_pred CCCCCC
Q ss_conf 576633
Q gi|254780711|r 251 DGDGRG 256 (461)
Q Consensus 251 D~~akg 256 (461)
T Consensus 241 DLlp~~ 246 (290)
T PRK10463 241 DLLPYL 246 (290)
T ss_pred HHHHHC
T ss_conf 512202