HHsearch alignment for GI: 254780711 and conserved domain: PRK10867
>PRK10867 signal recognition particle protein; Provisional.
Probab=100.00 E-value=0 Score=1144.95 Aligned_cols=441 Identities=47% Similarity=0.748 Sum_probs=427.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 94037799999998742888789899999999999999852469699999999999998303111269989999999999
Q gi|254780711|r 1 MFDNLQERLGSIFQNITGKGSLSETDISNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHD 80 (461)
Q Consensus 1 Mf~~L~~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~ 80 (461)
T Consensus 1 Mf~~Ls~~l~~~~~~l~g~~~lte~~i~~~lrEIr~ALLeADV~~~vvk~~i~~vke~~~g~~v~~~l~p~q~i~kiv~~ 80 (453)
T PRK10867 1 MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN 80 (453)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 93788899999999714998778999999999999999975688799999999999996335135789889999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 99987187742100025884189962344333468899999999861489507820542210047799998510347422
Q gi|254780711|r 81 ELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTL 160 (461)
Q Consensus 81 eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~ 160 (461)
T Consensus 81 eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~ 160 (453)
T PRK10867 81 ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (453)
T ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 99998588876663378999699997468885185899999999973898379855887705899999999985198043
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHC
Q ss_conf 23321036899999999997415886998334422211246899999985138511000310111225688889887635
Q gi|254780711|r 161 EVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARNFDKIV 240 (461)
Q Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~F~~~~ 240 (461)
T Consensus 161 ~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~~F~~~~ 240 (453)
T PRK10867 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240 (453)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 67889988999999999999779999999787601210888999999987637871379743223566899999999855
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84407764115766330367778884787302615867232100136889987735862788999874211267899888
Q gi|254780711|r 241 DLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMGDVVSLVEKAARNLNEKQAALTA 320 (461)
Q Consensus 241 ~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d~~~~~~l~ 320 (461)
T Consensus 241 ~~~gvIlTKlDgdarGG~alS~~~~t~~PI~FiG~GEk~ddle~F~p~r~asRILGmGDi~~Lvek~~~~~d~~~~~~~~ 320 (453)
T PRK10867 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLA 320 (453)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98707875046787613898999997869678866998245887684899998618987899999999875088999999
Q ss_pred HHHHCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCHHHH
Q ss_conf 653104-6379999999999851148899999873134423432311167888889999974589878608411335789
Q gi|254780711|r 321 KKIAKG-KFDLEDLAEQFRQTQKIGGIGSILRMLPGMPSLKQNIMPSSFDDKTINHHIAIIASMTKEERANPSIIKHSRK 399 (461)
Q Consensus 321 ~k~~~g-~F~l~Df~~Ql~~i~kmG~l~~il~miPG~~~~~~~~~~~~~~e~~lk~~~aII~SMT~~Er~~P~ll~~SR~ 399 (461)
T Consensus 321 ~k~~~g~~F~l~D~~~Q~~~i~kmG~l~~il~miPG~~~~~~~~-~~~~~~~~~~~~~aii~SMT~~Er~~p~il~~SR~ 399 (453)
T PRK10867 321 SKLKKGDGFDLNDFLEQLKQMKNMGGMASLMGKLPGMGQLPDNV-KSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRK 399 (453)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHH-HHCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHHHH
T ss_conf 99870698569999999999974577999997588965334555-61321778988999996489998739501133599
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 9972326679899999999999999999986068862017999
Q gi|254780711|r 400 KRIAAGSGTNAAKINKLLKLHRQVAEMMHSTQGLGGNALTQQI 442 (461)
Q Consensus 400 ~RIA~GSG~~v~eVn~Llk~f~~m~kmmk~~~~~~~~~~~~~~ 442 (461)
T Consensus 400 ~RIA~GSG~~v~eVn~Llkqf~~m~kmmk~m~k~~~~~~m~~m 442 (453)
T PRK10867 400 RRIAAGSGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRGM 442 (453)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
T ss_conf 9987569989999999999999999999987036878998753