HHsearch alignment for GI: 254780711 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.93 E-value=0.013 Score=40.07 Aligned_cols=100 Identities=25% Similarity=0.329 Sum_probs=72.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCC-
Q ss_conf 9999871877421000258841899623443334688999999998614895078205422100477999985103474-
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVD- 158 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~- 158 (461)
T Consensus 77 ~ElDRVLGGGlV-----~--GS~iLlgGePGIGKSTLlLQ~a~~la~--~~~vLYvSGEE----S~~Qik~RA~RLg~~~ 143 (454)
T PRK11823 77 GELDRVLGGGLV-----P--GSVVLIGGDPGIGKSTLLLQVAAALAA--GGKVLYVSGEE----SLQQIKLRAERLGLPS 143 (454)
T ss_pred HHHHHCCCCCCC-----C--CEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECCCH----HHHHHHHHHHHHCCCC
T ss_conf 566522158720-----6--648995079988899999999999855--99579981501----5789999999758888
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf -22233210368999999999974158869983344222
Q gi|254780711|r 159 -TLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNH 196 (461)
Q Consensus 159 -~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~ 196 (461)
T Consensus 144 ~~l~l~~et~l~~I----l~~i~~~~P~~lIIDSIQT~~ 178 (454)
T PRK11823 144 DNLYLLAETNLEDI----LATIEEEKPDLVVIDSIQTMY 178 (454)
T ss_pred CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHEEE
T ss_conf 87378853689999----999986099889994311154