HHsearch alignment for GI: 254780711 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=1.4e-45 Score=367.26 Aligned_cols=253 Identities=23% Similarity=0.391 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 99999999985246969999999999999830311126998999999999999987187742100025884189962344
Q gi|254780711|r 30 TLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQ 109 (461)
Q Consensus 30 ~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~ 109 (461)
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~q~IALVGPT 250 (436)
T PRK11889 179 IIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MITEEE-VIKYILEDMRSHFN---TENVFEK-EVQTIALIGPT 250 (436)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC---CCCHHH-HHHHHHHHHHHHCC---HHHHHHH-HCEEEEEECCC
T ss_conf 9999999988555258999999998631121341---102999-99999999887403---1013364-17179998999
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEE
Q ss_conf 333468899999999861489507820542210047799998510347422233210368999999999974-1588699
Q gi|254780711|r 110 GSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARD-GGYDAVI 188 (461)
Q Consensus 110 GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~-~~~D~ii 188 (461)
T Consensus 251 GVGKTTTIAKLAArf~~-~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~d---p~eL-~~AL~~lkdka~~DLIL 325 (436)
T PRK11889 251 GVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD---EAAM-TRALTYFKEEARVDYIL 325 (436)
T ss_pred CCCHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECC---HHHH-HHHHHHHHHCCCCCEEE
T ss_conf 98889999999999861-6980899980663476999999999984994399688---8999-99999876336888899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHC
Q ss_conf 83344222112468999999851385110003101112-25688889887635844077641157663303677788847
Q gi|254780711|r 189 LDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMRTVTG 267 (461)
Q Consensus 189 iDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~~~~~ 267 (461)
T Consensus 326 IDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATTK~~DL~eIi~rF~~-l~idglIfTKLDET~SlG~ILNv~~~s~ 404 (436)
T PRK11889 326 IDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSS 404 (436)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 929898846899999999998512777169999788998999999997257-9988289971325687037888998839
Q ss_pred CCHHHEECCCCC-CCCCCCCHHHHHHHHHC
Q ss_conf 873026158672-32100136889987735
Q gi|254780711|r 268 KPIKAIGTGEKI-NDLENFFPDRIANRILG 296 (461)
Q Consensus 268 ~PI~fig~GE~~-~dle~F~p~~~~~riLG 296 (461)
T Consensus 405 LPIsYvTdGQ~VPEDIevA~ae~LAk~mLe 434 (436)
T PRK11889 405 APIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHH
T ss_conf 987997899858753000699999999843