HHsearch alignment for GI: 254780711 and conserved domain: PRK12323
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional.
Probab=97.62 E-value=0.011 Score=40.80 Aligned_cols=216 Identities=17% Similarity=0.185 Sum_probs=97.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEE-----EECCCCCCCHHHHHHHHHHHCCCCCCCCCC----CCCH
Q ss_conf 88418996234433346889999999986148-9507-----820542210047799998510347422233----2103
Q gi|254780711|r 98 PSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK-KKIL-----MASLDVHRPAAQEQLRYLGEQIQVDTLEVI----PEQS 167 (461)
Q Consensus 98 ~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~-~kV~-----lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~----~~~d 167 (461)
T Consensus 36 r~~haylf~G~rGvGKTt~ari~Ak~lnc~~~~~~~g~~~~pcg~C~~--------C~~i~~g~~~d~~EiDaas~~~v~ 107 (721)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGPDGEGGITAQPCGQCRA--------CTEIDAGRFVDYIEMDAASNRGVD 107 (721)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH--------HHHHHCCCCCCEEEEECCCCCCHH
T ss_conf 975447502799888989999999997689986678987887877654--------687756898764774367678889
Q ss_pred HHHHHHHHHHHHH-HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-H----HHHHHHHHHH----
Q ss_conf 6899999999997-4158869983344222112468999999851385110003101112-2----5688889887----
Q gi|254780711|r 168 PEKIAIRATQSAR-DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTG-Q----DAVHLARNFD---- 237 (461)
Q Consensus 168 p~~i~~~a~~~a~-~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~G-q----~a~~~a~~F~---- 237 (461)
T Consensus 108 ~~r~l~~~~~y~P~~~~~KvyiiDevhmls~~--afnalLKtlEeP-P~hv~Fil-aTT~~~Kip~TilSRc~~f~~~~~ 183 (721)
T PRK12323 108 EMAQLLDQAVYAPTAGRFKVYMIDEVHMLTNH--AFNAMLKTLEEP-PPHVKFIL-ATTDPQKIPVTVLSRCLQFNLKQM 183 (721)
T ss_pred HHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHHHHCCC-CCCEEEEE-ECCCHHHCCHHHHHHHHHCCCCCC
T ss_conf 99999985455887664469998540005899--999999840179-75538999-438634485889877654234789
Q ss_pred ---------------HHCCCCC----EEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf ---------------6358440----776411576633036777888478730261586723210013688998773586
Q gi|254780711|r 238 ---------------KIVDLTG----IILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGMG 298 (461)
Q Consensus 238 ---------------~~~~i~g----iIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGmg 298 (461)
T Consensus 184 ~~~~i~~~l~~i~~~E~i~~~~~al~~ia~~a~Gs~R--Dalslld---Qaia~-~~g~-~~-------~~~v~~mlg~~ 249 (721)
T PRK12323 184 PPGHIVSHLDAILGQEGIGHEGNALRLLAQAAHGSMR--DALSLTD---QAIAY-SAGN-VS-------EEAVRGMLGAI 249 (721)
T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH--HHHHHHH---HHHHH-CCCC-CC-------HHHHHHHHCCC
T ss_conf 9999999999999983997799999999997589647--6888999---99986-5896-26-------99999986888
Q ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2788999874211267899--8886531046379999999999
Q gi|254780711|r 299 DVVSLVEKAARNLNEKQAA--LTAKKIAKGKFDLEDLAEQFRQ 339 (461)
Q Consensus 299 D~~~l~e~~~~~~d~~~~~--~l~~k~~~g~F~l~Df~~Ql~~ 339 (461)
T Consensus 250 d~~~~~~ll~al~~~d~~~~~~~~~~~~~~~~d~~~~l~~l~~ 292 (721)
T PRK12323 250 DQRYLVRLLDALAAEDGAAVLAIADEMADRSLSFAGALQDLAS 292 (721)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 7789999999999558999999999999868899999999999