HHsearch alignment for GI: 254780711 and conserved domain: PRK12402

Probab=97.55  E-value=0.0054  Score=43.05  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=54.9

Q ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCC--CCHHHHHH
Q ss_conf             58841899623443334688999999998614--895078205422100477999985103474222332--10368999
Q gi|254780711|r   97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLK--KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIP--EQSPEKIA  172 (461)
Q Consensus        97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~--~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~--~~dp~~i~  172 (461)
T Consensus        34 ~~~ph-lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~-~i~~~--~~~~~~~~~~~~~~~~~~d~i  109 (337)
T PRK12402         34 GNLPH-LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKK-YLVED--PRFAHFYDDPKRKYKSVIDNF  109 (337)
T ss_pred             CCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC-EEECC--CCHHHHHCCHHHCCCCHHHHH
T ss_conf             99876-988892984899999999999679975678333116531135640-01016--642344201533277378999


Q ss_pred             HHHHHHHH-----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999997-----4158869983344222112468999999851
Q gi|254780711|r  173 IRATQSAR-----DGGYDAVILDTAGRNHINDSLMQEISEIKSL  211 (461)
Q Consensus       173 ~~a~~~a~-----~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~  211 (461)
T Consensus       110 ~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq--~aLlk~lEe  151 (337)
T PRK12402        110 KHILKEYASMRPLSADYKLILFDNAEALREDAQ--QALRRIMER  151 (337)
T ss_pred             HHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHH--HHHHHHHHC
T ss_conf             999999861488778804999707131799999--999988740