HHsearch alignment for GI: 254780711 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=100.00 E-value=0 Score=405.38 Aligned_cols=263 Identities=21% Similarity=0.266 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEEC
Q ss_conf 9999999999852469699999999999998303111269989999999999999871877421000-258841899623
Q gi|254780711|r 29 NTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDL-NAPSPLVIMLVG 107 (461)
Q Consensus 29 ~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~-~~~~p~vIllvG 107 (461)
T Consensus 155 ~~~~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVG 230 (432)
T PRK12724 155 SPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGR----NHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVG 230 (432)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEEC
T ss_conf 68999999998756688999999999987538100110----67899999999998714774011035777762999989
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 44333468899999999861489507820542210047799998510347422233210368999999999974158869
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAV 187 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~i 187 (461)
T Consensus 231 PTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~---~~~el-~~al~~---~~~DlI 303 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---DIKKF-KETLAR---DGSELI 303 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEE---CHHHH-HHHHHH---CCCCEE
T ss_conf 99988899999999999997499279995266537799999999998599459951---89999-999985---699999
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCHHCC-HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 98334422211246899999985138---5110003101112-2568888988763584407764115766330367778
Q gi|254780711|r 188 ILDTAGRNHINDSLMQEISEIKSLTN---PHEILLVADALTG-QDAVHLARNFDKIVDLTGIILTRMDGDGRGGAALSMR 263 (461)
Q Consensus 188 iiDTaGR~~~d~~lm~El~~i~~~~~---p~e~~lV~da~~G-q~a~~~a~~F~~~~~i~giIlTKlD~~akgG~als~~ 263 (461)
T Consensus 304 LIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~-~l~~~~lIfTKLDET~s~G~ilni~ 382 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE-SLNYRRILLTKLDEADFLGSFLELA 382 (432)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 992999897899999999999986366788517999978899899999999842-6999849997122779866999999
Q ss_pred HHHCCCHHHEECCCCC-CCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 8847873026158672-321001368899877358627889
Q gi|254780711|r 264 TVTGKPIKAIGTGEKI-NDLENFFPDRIANRILGMGDVVSL 303 (461)
Q Consensus 264 ~~~~~PI~fig~GE~~-~dle~F~p~~~~~riLGmgD~~~l 303 (461)
T Consensus 383 ~~~~~PisYiT~GQ~VPdDI~~A~~~~la~lilg~~~~~~~ 423 (432)
T PRK12724 383 DTYSKSFTYLSVGQEVPFDILNATKNLMAECVVFPEKIAEL 423 (432)
T ss_pred HHHCCCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99889869980899797173335999999997667989987