HHsearch alignment for GI: 254780711 and conserved domain: PRK12736
>PRK12736 elongation factor Tu; Reviewed.
Probab=95.57 E-value=0.0043 Score=43.79 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=70.5
Q ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 258841-8996234433346889999999986148950782054221004779999851034742223321036899999
Q gi|254780711|r 96 NAPSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIR 174 (461)
Q Consensus 96 ~~~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~ 174 (461)
T Consensus 7 ~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~-~~~~~~~~------~~~D~~~eEr-~rGiTid~~------------ 66 (394)
T PRK12736 7 ERSKPHVNIGTIGHVDHGKTTLTAAITKVLAER-GLAQAKDY------ASIDAAPEEK-ARGITINTA------------ 66 (394)
T ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHC-CCCHHHHH------HHHCCCHHHH-CCCCEEEEE------------
T ss_conf 789987499999512884898998975045450-65102222------3311665562-478217841------------
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHH---HHHHCCCCC-EE-EEE
Q ss_conf 9999974158869983344222112468999999851385110003101112256888898---876358440-77-641
Q gi|254780711|r 175 ATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHEILLVADALTGQDAVHLARN---FDKIVDLTG-II-LTR 249 (461)
Q Consensus 175 a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~a~~---F~~~~~i~g-iI-lTK 249 (461)
T Consensus 67 -~~~~~t~~~~~~~iD~PGH~~fi~nm------i~Ga~~~D~alLVV~A~~G~~--~QT~EHl~l~~~lgv~~~IV~vnK 137 (394)
T PRK12736 67 -HVEYETEKRHYAHVDCPGHADYVKNM------ITGAAQMDGAILVVAATDGPM--PQTREHILLARQVGVPYIVVFLNK 137 (394)
T ss_pred -EEEEECCCEEEEEEECCCCHHHHCCE------EEEECCCCEEEEEEECCCCCH--HHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf -89997288369998889725431104------443534665899998587746--779999999998299915999988
Q ss_pred CCCCC
Q ss_conf 15766
Q gi|254780711|r 250 MDGDG 254 (461)
Q Consensus 250 lD~~a 254 (461)
T Consensus 138 ~D~v~ 142 (394)
T PRK12736 138 VDLVD 142 (394)
T ss_pred CCCCC
T ss_conf 78998