HHsearch alignment for GI: 254780711 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=95.66 E-value=0.25 Score=30.40 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=67.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf 99623443334688999999998614895078205422100477999985103474222--3321036899999999997
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE--VIPEQSPEKIAIRATQSAR 180 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~i~~~a~~~a~ 180 (461)
T Consensus 32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFL-aPT-~pLV~Qq~~~~~~~l~i~~~~i~~ltG~~~~~--~r~~~w-~ 106 (764)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLIL-APT-KPLVEQHAEFFRKFLNIDPEKIVVLTGEISPE--KRAALW-E 106 (764)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCC-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH--HHHHHH-C
T ss_conf 899959986689999999999997489889998-588-88999999999997099955289998887827--689986-0
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCC-H--HCCHHHHH-HHHHHHH
Q ss_conf 415886998334422211246899999985138511-000310-1--11225688-8898876
Q gi|254780711|r 181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE-ILLVAD-A--LTGQDAVH-LARNFDK 238 (461)
Q Consensus 181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e-~~lV~d-a--~~Gq~a~~-~a~~F~~ 238 (461)
T Consensus 107 --~~-~Viv~TPQvl~nd--L~------~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~ 158 (764)
T PRK13766 107 --KA-KVIVATPQVIEND--LL------AGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE 158 (764)
T ss_pred --CC-CEEEECCHHHHHH--HH------HCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf --79-9999990899999--98------29867888228999746666677628999999985