HHsearch alignment for GI: 254780711 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=95.66  E-value=0.25  Score=30.40  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHHHHHHHH
Q ss_conf             99623443334688999999998614895078205422100477999985103474222--3321036899999999997
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLE--VIPEQSPEKIAIRATQSAR  180 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~--~~~~~dp~~i~~~a~~~a~  180 (461)
T Consensus        32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFL-aPT-~pLV~Qq~~~~~~~l~i~~~~i~~ltG~~~~~--~r~~~w-~  106 (764)
T PRK13766         32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLIL-APT-KPLVEQHAEFFRKFLNIDPEKIVVLTGEISPE--KRAALW-E  106 (764)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEE-CCC-HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHH--HHHHHH-C
T ss_conf             899959986689999999999997489889998-588-88999999999997099955289998887827--689986-0


Q ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCC-H--HCCHHHHH-HHHHHHH
Q ss_conf             415886998334422211246899999985138511-000310-1--11225688-8898876
Q gi|254780711|r  181 DGGYDAVILDTAGRNHINDSLMQEISEIKSLTNPHE-ILLVAD-A--LTGQDAVH-LARNFDK  238 (461)
Q Consensus       181 ~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~p~e-~~lV~d-a--~~Gq~a~~-~a~~F~~  238 (461)
T Consensus       107 --~~-~Viv~TPQvl~nd--L~------~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~  158 (764)
T PRK13766        107 --KA-KVIVATPQVIEND--LL------AGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE  158 (764)
T ss_pred             --CC-CEEEECCHHHHHH--HH------HCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf             --79-9999990899999--98------29867888228999746666677628999999985