HHsearch alignment for GI: 254780711 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=98.35 E-value=1.5e-05 Score=62.61 Aligned_cols=43 Identities=35% Similarity=0.427 Sum_probs=34.7
Q ss_pred CCCEEEEEECC-CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88418996234-433346889999999986148950782054221
Q gi|254780711|r 98 PSPLVIMLVGL-QGSGKTTTTAKIAYHLKTLKKKKILMASLDVHR 141 (461)
Q Consensus 98 ~~p~vIllvGl-~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R 141 (461)
T Consensus 119 ~~~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G~RVLlIDLDPQg 162 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA 162 (405)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHH
T ss_conf 998289997888776599999999999997-79988999645617