HHsearch alignment for GI: 254780711 and conserved domain: PRK13976
>PRK13976 thymidylate kinase; Provisional.
Probab=96.78 E-value=0.025 Score=37.92 Aligned_cols=114 Identities=23% Similarity=0.336 Sum_probs=55.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEECCCCCCCHHH---HHHHHHHHC-CCCCCCC--CCCCCHHHHHHHHH
Q ss_conf 9962344333468899999999861-489507820542210047---799998510-3474222--33210368999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTL-KKKKILMASLDVHRPAAQ---EQLRYLGEQ-IQVDTLE--VIPEQSPEKIAIRA 175 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~-~~~kV~lv~~Dt~R~aA~---eQL~~~a~~-~~v~~~~--~~~~~dp~~i~~~a 175 (461)
T Consensus 3 IvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~----trEPggt~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh~~~~ 78 (202)
T PRK13976 3 ITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVL----TREPGGTSFNESVRGLLLSTKNLDKLSELLLFIAMRREHFVKV 78 (202)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE----ECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999899999899999999999986069986898----3799998278999999716557996999999999999999999
Q ss_pred HHHHHHCCCCEEEEEC----------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf 9999741588699833----------44222112468999999851385110003101
Q gi|254780711|r 176 TQSARDGGYDAVILDT----------AGRNHINDSLMQEISEIKSLTNPHEILLVADA 223 (461)
Q Consensus 176 ~~~a~~~~~D~iiiDT----------aGR~~~d~~lm~El~~i~~~~~p~e~~lV~da 223 (461)
T Consensus 79 I~PaL~~g-~~VI~DRy~~St~AYQg~~~-gl~~~~i~~l~~~~~~~~PDlt~~-Ldi 133 (202)
T PRK13976 79 ILPALTQG-KIVICDRFIDSTIAYQGYGC-GIDLKLIRDLNDLVVDIYPDITFI-LDI 133 (202)
T ss_pred HHHHHHCC-CEEEECCCCCHHHHHHCCCC-CCCHHHHHHHHHHHCCCCCCEEEE-EEC
T ss_conf 88888669-98997485355788732267-989999999999840789887999-837