HHsearch alignment for GI: 254780711 and conserved domain: TIGR00631
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.40 E-value=0.0045 Score=43.69 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=49.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-----------CCCCCCC-----
Q ss_conf 418996234433346889999999986148950782054221004779999851034-----------7422233-----
Q gi|254780711|r 100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-----------VDTLEVI----- 163 (461)
Q Consensus 100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-----------v~~~~~~----- 163 (461)
T Consensus 30 ~~QtL-LGvTGsGKTFT~AnVIa~~----~rPTLV~a----------HNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQ 94 (667)
T TIGR00631 30 KEQTL-LGVTGSGKTFTMANVIAQV----QRPTLVLA----------HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQ 94 (667)
T ss_pred CCEEE-EEEECCCHHHHHHHHHHHH----CCCEEEEC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 71478-5321486278898999984----79849985----------777679999999986386772452552032378
Q ss_pred -----------CCCH-----HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf -----------2103-----6899999999997415886998334422
Q gi|254780711|r 164 -----------PEQS-----PEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 164 -----------~~~d-----p~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
T Consensus 95 PEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScI 142 (667)
T TIGR00631 95 PEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCI 142 (667)
T ss_pred CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 732147988413045530046767788988864237878999875520