HHsearch alignment for GI: 254780711 and conserved domain: TIGR00631

>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.40  E-value=0.0045  Score=43.69  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC-----------CCCCCCC-----
Q ss_conf             418996234433346889999999986148950782054221004779999851034-----------7422233-----
Q gi|254780711|r  100 PLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ-----------VDTLEVI-----  163 (461)
Q Consensus       100 p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~-----------v~~~~~~-----  163 (461)
T Consensus        30 ~~QtL-LGvTGsGKTFT~AnVIa~~----~rPTLV~a----------HNKTLAAQLY~EfKefFPeNAVEYFvSYYDYYQ   94 (667)
T TIGR00631        30 KEQTL-LGVTGSGKTFTMANVIAQV----QRPTLVLA----------HNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQ   94 (667)
T ss_pred             CCEEE-EEEECCCHHHHHHHHHHHH----CCCEEEEC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             71478-5321486278898999984----79849985----------777679999999986386772452552032378


Q ss_pred             -----------CCCH-----HHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             -----------2103-----6899999999997415886998334422
Q gi|254780711|r  164 -----------PEQS-----PEKIAIRATQSARDGGYDAVILDTAGRN  195 (461)
Q Consensus       164 -----------~~~d-----p~~i~~~a~~~a~~~~~D~iiiDTaGR~  195 (461)
T Consensus        95 PEAYvP~~DtyIEKdaSINdeIerlR~SAT~SLl~RrDVIVVASVScI  142 (667)
T TIGR00631        95 PEAYVPSKDTYIEKDASINDEIERLRLSATKSLLERRDVIVVASVSCI  142 (667)
T ss_pred             CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf             732147988413045530046767788988864237878999875520