HHsearch alignment for GI: 254780711 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.08 E-value=0.19 Score=31.25 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=60.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034---------742223321036899
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKI 171 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i 171 (461)
T Consensus 13 ~iTQiYGp~G~GKTn~c~~~a~~a~~-~Gk~v~--YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~a 89 (223)
T TIGR02237 13 IITQIYGPPGSGKTNICLILAVNAAR-QGKKVV--YIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVA 89 (223)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEE--EEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf 58898758998678999999999986-189589--996289832899999863058898888415355235356789999
Q ss_pred HHHHHHHHHHC--CCCEEEEECCCCCCC
Q ss_conf 99999999741--588699833442221
Q gi|254780711|r 172 AIRATQSARDG--GYDAVILDTAGRNHI 197 (461)
Q Consensus 172 ~~~a~~~a~~~--~~D~iiiDTaGR~~~ 197 (461)
T Consensus 90 i~~~~~~~~~~G~~~~LvVvDs~t~~YR 117 (223)
T TIGR02237 90 IQKTSKLIDRDGDKADLVVVDSFTALYR 117 (223)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCHHHHH
T ss_conf 9999999860688331488815334542