HHsearch alignment for GI: 254780711 and conserved domain: TIGR02237

>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.08  E-value=0.19  Score=31.25  Aligned_cols=94  Identities=20%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCC---------CCCCCCCCCCHHHHH
Q ss_conf             18996234433346889999999986148950782054221004779999851034---------742223321036899
Q gi|254780711|r  101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQ---------VDTLEVIPEQSPEKI  171 (461)
Q Consensus       101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~---------v~~~~~~~~~dp~~i  171 (461)
T Consensus        13 ~iTQiYGp~G~GKTn~c~~~a~~a~~-~Gk~v~--YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~a   89 (223)
T TIGR02237        13 IITQIYGPPGSGKTNICLILAVNAAR-QGKKVV--YIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEVA   89 (223)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEE--EEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHHH
T ss_conf             58898758998678999999999986-189589--996289832899999863058898888415355235356789999


Q ss_pred             HHHHHHHHHHC--CCCEEEEECCCCCCC
Q ss_conf             99999999741--588699833442221
Q gi|254780711|r  172 AIRATQSARDG--GYDAVILDTAGRNHI  197 (461)
Q Consensus       172 ~~~a~~~a~~~--~~D~iiiDTaGR~~~  197 (461)
T Consensus        90 i~~~~~~~~~~G~~~~LvVvDs~t~~YR  117 (223)
T TIGR02237        90 IQKTSKLIDRDGDKADLVVVDSFTALYR  117 (223)
T ss_pred             HHHHHHHHHCCCCEEEEEEEECCHHHHH
T ss_conf             9999999860688331488815334542