HHsearch alignment for GI: 254780711 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=96.37 E-value=0.034 Score=36.99 Aligned_cols=203 Identities=22% Similarity=0.312 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999987187742100025884189962344333468899999999861489507820542210047799998
Q gi|254780711|r 72 QMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYL 151 (461)
Q Consensus 72 ~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~ 151 (461)
T Consensus 20 ~~iv~tL~NAi~~------------~ri~HAYLF~GpRGtGKTS~ARIfAKaL-N-----C~-~~--------------- 65 (363)
T TIGR02397 20 EHIVKTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKAL-N-----CQ-GP--------------- 65 (363)
T ss_pred HHHHHHHHHHHHH------------CCCCCEEEECCCCCCCHHHHHHHHHHHH-C-----CC-CC---------------
T ss_conf 7999999999971------------8966234502859976355899999986-5-----88-78---------------
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC------------------
Q ss_conf 51034742223321036899999999997415886998334422211246899999985138------------------
Q gi|254780711|r 152 GEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSLTN------------------ 213 (461)
Q Consensus 152 a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~~~------------------ 213 (461)
T Consensus 66 ---~~~PC---n~C~~-------C~~i~~g~~~DviEiDAASN~gVD-----~IR~l~e~v~y~P~~~kYKvYIIDEVHM 127 (363)
T TIGR02397 66 ---DGEPC---NECES-------CKEINSGSSLDVIEIDAASNNGVD-----DIRELRENVKYAPSKGKYKVYIIDEVHM 127 (363)
T ss_pred ---CCCCC---CCCCH-------HHHHHCCCCCCEEEECCCCCCCHH-----HHHHHHHHHCCCCCCCCCCEEEEECCCC
T ss_conf ---77877---77502-------277652898666886486568788-----9999987303687554433588732302
Q ss_pred ----------------CCCCCCCCCHHCCH-----HHHHHHHHHH-------------------HHCCCC----CEEEEE
Q ss_conf ----------------51100031011122-----5688889887-------------------635844----077641
Q gi|254780711|r 214 ----------------PHEILLVADALTGQ-----DAVHLARNFD-------------------KIVDLT----GIILTR 249 (461)
Q Consensus 214 ----------------p~e~~lV~da~~Gq-----~a~~~a~~F~-------------------~~~~i~----giIlTK 249 (461)
T Consensus 128 LS~~AFNALLKTLEEPP~hV~FIl-ATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~ 206 (363)
T TIGR02397 128 LSKSAFNALLKTLEEPPEHVVFIL-ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 206 (363)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEE-ECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 865689998765227987628887-3487112055402100031267899899999999999870883177899999996
Q ss_pred CCCCCCCCHHHHHHHHHCCCHHHEECCC--CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHH--HHHHHHHHH
Q ss_conf 1576633036777888478730261586--72321001368899877358627889998742112-678--998886531
Q gi|254780711|r 250 MDGDGRGGAALSMRTVTGKPIKAIGTGE--KINDLENFFPDRIANRILGMGDVVSLVEKAARNLN-EKQ--AALTAKKIA 324 (461)
Q Consensus 250 lD~~akgG~als~~~~~~~PI~fig~GE--~~~dle~F~p~~~~~riLGmgD~~~l~e~~~~~~d-~~~--~~~l~~k~~ 324 (461)
T Consensus 207 a~GS~R--DAlsllDQ----~~~~~~~~DG~i~-------~~~v~~~lGl~~~~~l~~l~~~~~~~~d~~~~l~~~~~~~ 273 (363)
T TIGR02397 207 ADGSMR--DALSLLDQ----AISFGNGSDGKIT-------YEDVNEMLGLVDEEKLIELLEAILNKRDTEEALKILDEIL 273 (363)
T ss_pred CCCCCC--HHHHHHHH----HHHHCCCCCCCCC-------HHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 289610--68899999----9982688788657-------8999998357778999999999753876889999999998
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 0463799999999998
Q gi|254780711|r 325 KGKFDLEDLAEQFRQT 340 (461)
Q Consensus 325 ~g~F~l~Df~~Ql~~i 340 (461)
T Consensus 274 ~~G~~~~~f~~~l~~~ 289 (363)
T TIGR02397 274 ESGVDPEKFLEDLIEF 289 (363)
T ss_pred HCCCCHHHHHHHHHHH
T ss_conf 7288898999999999