HHsearch alignment for GI: 254780711 and conserved domain: TIGR02538

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.20  E-value=0.01  Score=41.03  Aligned_cols=115  Identities=18%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             8841-89962344333468899999999861489507820542---2100477999985103474222332103689999
Q gi|254780711|r   98 PSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI  173 (461)
Q Consensus        98 ~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~  173 (461)
T Consensus       323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvNpK-~GLTF---------A----  385 (577)
T TIGR02538       323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVNPK-IGLTF---------A----  385 (577)
T ss_pred             HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCCCC-CCCCH---------H----
T ss_conf             079972886266598416878763---112577674501144772464077151204667-88787---------9----


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCC-CCCCCHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999974158869983344222112468999999851---385110-00310111225688889887635844
Q gi|254780711|r  174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL---TNPHEI-LLVADALTGQDAVHLARNFDKIVDLT  243 (461)
Q Consensus       174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~---~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~i~  243 (461)
T Consensus       386 aALrSFLRQDPDIIM-------------VGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp~Tl~RL~N-MGia  445 (577)
T TIGR02538       386 AALRSFLRQDPDIIM-------------VGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVN-MGIA  445 (577)
T ss_pred             HHHHHHCCCCCCEEE-------------EECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH-CCCH
T ss_conf             999864068998898-------------70666421589999984048721010001685899999975-3841