HHsearch alignment for GI: 254780711 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=95.20 E-value=0.01 Score=41.03 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=59.8
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8841-89962344333468899999999861489507820542---2100477999985103474222332103689999
Q gi|254780711|r 98 PSPL-VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDV---HRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAI 173 (461)
Q Consensus 98 ~~p~-vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt---~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~ 173 (461)
T Consensus 323 ~kPqGMvLVTGPTGSGKTVSLYTa---LniLN~~~~NISTAEDPVEINLpGINQVnvNpK-~GLTF---------A---- 385 (577)
T TIGR02538 323 HKPQGMVLVTGPTGSGKTVSLYTA---LNILNTEEVNISTAEDPVEINLPGINQVNVNPK-IGLTF---------A---- 385 (577)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHH---HCCCCCCCCCCCCCCCCEEEEECCCCEECCCCC-CCCCH---------H----
T ss_conf 079972886266598416878763---112577674501144772464077151204667-88787---------9----
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCCCCC-CCCCCHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999974158869983344222112468999999851---385110-00310111225688889887635844
Q gi|254780711|r 174 RATQSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL---TNPHEI-LLVADALTGQDAVHLARNFDKIVDLT 243 (461)
Q Consensus 174 ~a~~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~---~~p~e~-~lV~da~~Gq~a~~~a~~F~~~~~i~ 243 (461)
T Consensus 386 aALrSFLRQDPDIIM-------------VGEIRDLETAEIAiKAAqTGHLVlSTLHTNdAp~Tl~RL~N-MGia 445 (577)
T TIGR02538 386 AALRSFLRQDPDIIM-------------VGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVN-MGIA 445 (577)
T ss_pred HHHHHHCCCCCCEEE-------------EECCCCHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHH-CCCH
T ss_conf 999864068998898-------------70666421589999984048721010001685899999975-3841