HHsearch alignment for GI: 254780711 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=95.27 E-value=0.027 Score=37.78 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 20 ~G~P--vHl~GPaG~GKT~LA~hvA----~~r~RPV~l~~Gd~-------eL~~------~DLvG~~~g~~~~kv----~ 76 (265)
T TIGR02640 20 SGYP--VHLRGPAGTGKTTLAMHVA----RKRDRPVVLINGDA-------ELTT------SDLVGSYAGYTRKKV----V 76 (265)
T ss_pred CCCC--EEEECCCCCCHHHHHHHHH----HHCCCCEEEEECCC-------CCCC------CCCCCCCCCCEEEEE----E
T ss_conf 7886--6744788855689999999----73689689986582-------3265------442315467522223----2
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-------CCC----------CCCCCCCCHHCCHHHHHHHHHHHHH
Q ss_conf 99974158869983344222112468999999851-------385----------1100031011122568888988763
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHINDSLMQEISEIKSL-------TNP----------HEILLVADALTGQDAVHLARNFDKI 239 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~d~~lm~El~~i~~~-------~~p----------~e~~lV~da~~Gq~a~~~a~~F~~~ 239 (461)
T Consensus 77 DqfihnV--~K~~d~~~~~W~D~rLt~Av~eG~TLVYdEF~RskP~~nNVLLSvlEE~vL~LPg~~~~~~------Yv~V 148 (265)
T TIGR02640 77 DQFIHNV--VKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVLEEGVLELPGKRGESR------YVDV 148 (265)
T ss_pred ECCEEEE--ECCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC------CEEE
T ss_conf 0121113--4251220026678357899756972766475788620456567555523215888787787------2257
Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHCC----CCHHHHHHHHHHHH--HH
Q ss_conf 5844077641157663303677788847873026158672321001368899877358----62788999874211--26
Q gi|254780711|r 240 VDLTGIILTRMDGDGRGGAALSMRTVTGKPIKAIGTGEKINDLENFFPDRIANRILGM----GDVVSLVEKAARNL--NE 313 (461)
Q Consensus 240 ~~i~giIlTKlD~~akgG~als~~~~~~~PI~fig~GE~~~dle~F~p~~~~~riLGm----gD~~~l~e~~~~~~--d~ 313 (461)
T Consensus 149 hP~FR~IfT------------------SNp~EYAGVh~~QDA--------LlDRL~ti~~D~~D~~~e~ai~~~~t~~~~ 202 (265)
T TIGR02640 149 HPEFRVIFT------------------SNPVEYAGVHETQDA--------LLDRLVTISMDYPDEDTETAILRAKTDVAE 202 (265)
T ss_pred CCCCCEEEC------------------CCCCCCCCCCCHHHH--------HHHHHCCCCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 887024631------------------487010576771667--------766440045785444789999998606124
Q ss_pred HHHHHH
Q ss_conf 789988
Q gi|254780711|r 314 KQAALT 319 (461)
Q Consensus 314 ~~~~~l 319 (461)
T Consensus 203 ~~a~~I 208 (265)
T TIGR02640 203 ESAATI 208 (265)
T ss_pred HHHHHH
T ss_conf 678999