HHsearch alignment for GI: 254780711 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.95 E-value=1e-26 Score=224.08 Aligned_cols=149 Identities=28% Similarity=0.311 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999999999852469699999999999998303111269989999999999999871877421000258841899623
Q gi|254780711|r 28 SNTLREIRRTFLEADVSLEVVQSFSKRVQEKAKGEKILRSIQPGQMVIKIVHDELVEVLGKESIELDLNAPSPLVIMLVG 107 (461)
Q Consensus 28 ~~~l~ei~~aLLeaDV~~~vv~~~~~~Ik~k~~~~~~~~~~~~~~~i~kiv~~eL~~lLg~~~~~l~~~~~~p~vIllvG 107 (461)
T Consensus 133 ~~~~~~l~~~L~~~gv~~~~~~~l~~~~~~~~---------~~-~~~~~~l~~~L~~~i~~~~-~~~~~~~~~~vi~lvG 201 (282)
T TIGR03499 133 DPEGAKLYERLEEAGVSEELARELLEKLPERA---------DA-ESAWRWLREALENMLPVKP-EEDEILEQGGVIALVG 201 (282)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---------CH-HHHHHHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEC
T ss_conf 86899999999986999999999999746029---------97-8999999999996477788-7655445672799977
Q ss_pred CCCCCHHHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 443334688999999998614-8950782054221004779999851034742223321036899999999997415886
Q gi|254780711|r 108 LQGSGKTTTTAKIAYHLKTLK-KKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGYDA 186 (461)
Q Consensus 108 l~GsGKTTT~aKLA~~~~~~~-~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~D~ 186 (461)
T Consensus 202 PTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRigA~eQLk~ya~il~vp~~vv~~~~~---l-~~~l~~~--~~~d~ 275 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKE---L-AKALERL--RDKDL 275 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEECCHHH---H-HHHHHHC--CCCCE
T ss_conf 8887578899999999999738996799980777678999999999995974899399999---9-9999865--79899
Q ss_pred EEEECCC
Q ss_conf 9983344
Q gi|254780711|r 187 VILDTAG 193 (461)
Q Consensus 187 iiiDTaG 193 (461)
T Consensus 276 IlIDTaG 282 (282)
T TIGR03499 276 ILIDTAG 282 (282)
T ss_pred EEEECCC
T ss_conf 9981979