HHsearch alignment for GI: 254780711 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.19 E-value=0.08 Score=34.13 Aligned_cols=121 Identities=20% Similarity=0.272 Sum_probs=60.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 58841899623443334688999999998614895078205422100477999985103474222332103689999999
Q gi|254780711|r 97 APSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 97 ~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 16 ~~~p-~IaivGrpNvGKSTL~N~L~----g--~k~~a~vs-~~--pGtTr---------~i~~~~~-------------- 62 (179)
T TIGR03598 16 DDGP-EIAFAGRSNVGKSSLINALT----N--RKKLARTS-KT--PGRTQ---------LINFFEV-------------- 62 (179)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHH----C--CCCEEEEC-CC--CCEEE---------ECCEEEE--------------
T ss_conf 8897-89998699988899999986----8--98558970-89--97366---------0232010--------------
Q ss_pred HHHHHCCCCEEEEECCCC-----CCCHHHHHHH-HHHHHHH-CCCCCCCCCCCHHCC--HHHHHHHHHHHHHCCC-CCEE
Q ss_conf 999741588699833442-----2211246899-9999851-385110003101112--2568888988763584-4077
Q gi|254780711|r 177 QSARDGGYDAVILDTAGR-----NHINDSLMQE-ISEIKSL-TNPHEILLVADALTG--QDAVHLARNFDKIVDL-TGII 246 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR-----~~~d~~lm~E-l~~i~~~-~~p~e~~lV~da~~G--q~a~~~a~~F~~~~~i-~giI 246 (461)
T Consensus 63 ------~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~-~kp~iiv 135 (179)
T TIGR03598 63 ------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDER-GIPVLIV 135 (179)
T ss_pred ------CCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHC-CCCEEEE
T ss_conf ------473699977760211278888999999999999998864302898743779989999999999975-9988999
Q ss_pred EEECCCCCCCC
Q ss_conf 64115766330
Q gi|254780711|r 247 LTRMDGDGRGG 257 (461)
Q Consensus 247 lTKlD~~akgG 257 (461)
T Consensus 136 lNK~Dll~~~~ 146 (179)
T TIGR03598 136 LTKADKLKKSE 146 (179)
T ss_pred EECCCCCCHHH
T ss_conf 97813069899