HHsearch alignment for GI: 254780711 and conserved domain: cd00009

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54  E-value=0.00071  Score=49.79  Aligned_cols=79  Identities=18%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             84189962344333468899999999861489507820542210047799998510347422233210368999999999
Q gi|254780711|r   99 SPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQS  178 (461)
Q Consensus        99 ~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~  178 (461)
T Consensus        18 ~~~~ill~GppGtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~   79 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEGLVVAELFGHF-----------------LVRLLFEL   79 (151)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEEHHHCCHHHHHHHHHHHH-----------------HHHHHHHH
T ss_conf             9980899899998865999999997121-37982785477704677775760577-----------------88989999


Q ss_pred             HHHCCCCEEEEECCCCC
Q ss_conf             97415886998334422
Q gi|254780711|r  179 ARDGGYDAVILDTAGRN  195 (461)
Q Consensus       179 a~~~~~D~iiiDTaGR~  195 (461)
T Consensus        80 ~~~~~~~vl~iDEi~~l   96 (151)
T cd00009          80 AEKAKPGVLFIDEIDSL   96 (151)
T ss_pred             HHHCCCCEEEEECHHHC
T ss_conf             99769986982016655