HHsearch alignment for GI: 254780711 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.66 E-value=0.19 Score=31.19 Aligned_cols=127 Identities=24% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEECCCCCCHHHHHH-HHHHHHHHH--CCCCEEEECCCCCCCHHH---HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9962344333468899-999999861--489507820542210047---7999985103474222332103689999999
Q gi|254780711|r 103 IMLVGLQGSGKTTTTA-KIAYHLKTL--KKKKILMASLDVHRPAAQ---EQLRYLGEQIQVDTLEVIPEQSPEKIAIRAT 176 (461)
Q Consensus 103 IllvGl~GsGKTTT~a-KLA~~~~~~--~~~kV~lv~~Dt~R~aA~---eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~ 176 (461)
T Consensus 39 vi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PT-rELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~----~ 113 (203)
T cd00268 39 VIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT-RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQ----I 113 (203)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECC-HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHH----H
T ss_conf 8997579972228888699999861667689669999687-9999999999998505798389998389887999----9
Q ss_pred HHHHHCCCCEEEEECCCCCCC------------------------HHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHH
Q ss_conf 999741588699833442221------------------------12468999999851385110003101112256888
Q gi|254780711|r 177 QSARDGGYDAVILDTAGRNHI------------------------NDSLMQEISEIKSLTNPHEILLVADALTGQDAVHL 232 (461)
Q Consensus 177 ~~a~~~~~D~iiiDTaGR~~~------------------------d~~lm~El~~i~~~~~p~e~~lV~da~~Gq~a~~~ 232 (461)
T Consensus 114 ~~l-~~~~-~IlI~TPgrl~~~l~~~~~~l~~l~~lVlDEAD~ll~~gf~~~i~~I~~~l~~~~Q~~lfSAT~~~~v~~l 191 (203)
T cd00268 114 RKL-KRGP-HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDL 191 (203)
T ss_pred HHH-HCCC-EEEEECCHHHHHHHHCCCCCCCCCCEEEEECHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
T ss_conf 998-5387-59996818999999848865132248999858888747769999999985896777999980499889999
Q ss_pred HHHH
Q ss_conf 8988
Q gi|254780711|r 233 ARNF 236 (461)
Q Consensus 233 a~~F 236 (461)
T Consensus 192 ~~~~ 195 (203)
T cd00268 192 ARKF 195 (203)
T ss_pred HHHH
T ss_conf 9997