HHsearch alignment for GI: 254780711 and conserved domain: cd00983
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.05 E-value=0.011 Score=40.60 Aligned_cols=94 Identities=19% Similarity=0.273 Sum_probs=61.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHHHHH
Q ss_conf 18996234433346889999999986148950782054221004779999851034742223-32103689999999999
Q gi|254780711|r 101 LVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEV-IPEQSPEKIAIRATQSA 179 (461)
Q Consensus 101 ~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~-~~~~dp~~i~~~a~~~a 179 (461)
T Consensus 56 Rivei~G~essGKTtlal~~ia~aQk~gg-~~~~i--DaE~--a~d--~~~a~~lGVD~~~l~~~qp~~~Eq~l~i~~~l 128 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGG-TVAFI--DAEH--ALD--PVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEE--EHHH--CCC--HHHHHHCCCCHHHEEEECCCHHHHHHHHHHHH
T ss_conf 08999889877799999999999873598-39999--6254--259--89999809984675896663899999999997
Q ss_pred H-HCCCCEEEEECCCCCCCHHHH
Q ss_conf 7-415886998334422211246
Q gi|254780711|r 180 R-DGGYDAVILDTAGRNHINDSL 201 (461)
Q Consensus 180 ~-~~~~D~iiiDTaGR~~~d~~l 201 (461)
T Consensus 129 i~s~~~dliViDSvaal~p~~E~ 151 (325)
T cd00983 129 VRSGAVDLIVVDSVAALVPKAEI 151 (325)
T ss_pred HCCCCCCEEEECCCCCCCCHHHH
T ss_conf 51588767998151123657887