HHsearch alignment for GI: 254780711 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.53 E-value=0.0011 Score=48.45 Aligned_cols=96 Identities=23% Similarity=0.285 Sum_probs=59.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8996234433346889999999986148950782054221004779999851---0347422233210368999999999
Q gi|254780711|r 102 VIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGE---QIQVDTLEVIPEQSPEKIAIRATQS 178 (461)
Q Consensus 102 vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~---~~~v~~~~~~~~~dp~~i~~~a~~~ 178 (461)
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9899989999899999999999876-399799998666448999999986224671307999359997699999999999
Q ss_pred HHH-CCCCEEEEECCCCCCCH
Q ss_conf 974-15886998334422211
Q gi|254780711|r 179 ARD-GGYDAVILDTAGRNHIN 198 (461)
Q Consensus 179 a~~-~~~D~iiiDTaGR~~~d 198 (461)
T Consensus 80 ~~~~~~~vliiiDSit~~~~a 100 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHHCCCCEEEEEECHHHHHHH
T ss_conf 998699779999288998877