HHsearch alignment for GI: 254780711 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.05 E-value=0.0098 Score=41.10 Aligned_cols=100 Identities=29% Similarity=0.376 Sum_probs=72.8
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 99998718774210002588418996234433346889999999986148950782054221004779999851034742
Q gi|254780711|r 80 DELVEVLGKESIELDLNAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDT 159 (461)
Q Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~ 159 (461)
T Consensus 69 ~ElDRVLGGGiV-----p--GSvvLlgGePGIGKSTLLLQia~~la~-~~~~vLYvSGEE----S~~QIk~RA~RLg~~~ 136 (372)
T cd01121 69 EELDRVLGGGLV-----P--GSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE----SPEQIKLRADRLGIST 136 (372)
T ss_pred HHHHHHHCCCCC-----C--CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECHH----HHHHHHHHHHHHCCCC
T ss_conf 666540057730-----6--717998259988688999999999986-399389982456----7899998999858788
Q ss_pred --CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf --223321036899999999997415886998334422
Q gi|254780711|r 160 --LEVIPEQSPEKIAIRATQSARDGGYDAVILDTAGRN 195 (461)
Q Consensus 160 --~~~~~~~dp~~i~~~a~~~a~~~~~D~iiiDTaGR~ 195 (461)
T Consensus 137 ~~l~l~set~le~I----l~~i~~~kP~~lIIDSIQT~ 170 (372)
T cd01121 137 ENLYLLAETNLEDI----LASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred CCCEEEECCCHHHH----HHHHHHHCCCEEEEECHHHC
T ss_conf 77278843569999----99999719988999562202