HHsearch alignment for GI: 254780711 and conserved domain: cd01876
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.87 E-value=0.013 Score=40.22 Aligned_cols=143 Identities=19% Similarity=0.327 Sum_probs=70.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r 103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG 182 (461)
Q Consensus 103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~ 182 (461)
T Consensus 2 IaivG~pN~GKSTL~N~L~~------~~~~~~vs-~~--~gtT-------r--~i~~~~~-------------------- 43 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN------RKKLARTS-KT--PGKT-------Q--LINFFNV-------------------- 43 (170)
T ss_pred EEEECCCCCCHHHHHHHHHC------CCCEEEEE-CC--CCEE-------E--EEEEEEE--------------------
T ss_conf 89998999999999999968------99627860-78--9778-------5--2058853--------------------
Q ss_pred CCCEEEEECCCC--CCCHHHHHH----HHHHHHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 588699833442--221124689----999998513-851100031011122--568888988763584-4077641157
Q gi|254780711|r 183 GYDAVILDTAGR--NHINDSLMQ----EISEIKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDL-TGIILTRMDG 252 (461)
Q Consensus 183 ~~D~iiiDTaGR--~~~d~~lm~----El~~i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i-~giIlTKlD~ 252 (461)
T Consensus 44 ~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~-~~kp~iiVlNKiDl 122 (170)
T cd01876 44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LGIPFLVVLTKADK 122 (170)
T ss_pred CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEEEC
T ss_conf 87799996578401016877999999999999984063349999996322374868999999987-69987999986753
Q ss_pred CCCCCH--HH-HHHHH-----HCCCHHHEEC--CCCCCCCCC
Q ss_conf 663303--67-77888-----4787302615--867232100
Q gi|254780711|r 253 DGRGGA--AL-SMRTV-----TGKPIKAIGT--GEKINDLEN 284 (461)
Q Consensus 253 ~akgG~--al-s~~~~-----~~~PI~fig~--GE~~~dle~ 284 (461)
T Consensus 123 v~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~gi~~L~~ 164 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 787789999999999874217998399998899977999999