HHsearch alignment for GI: 254780711 and conserved domain: cd01876

>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.87  E-value=0.013  Score=40.22  Aligned_cols=143  Identities=19%  Similarity=0.327  Sum_probs=70.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99623443334688999999998614895078205422100477999985103474222332103689999999999741
Q gi|254780711|r  103 IMLVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDG  182 (461)
Q Consensus       103 IllvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~  182 (461)
T Consensus         2 IaivG~pN~GKSTL~N~L~~------~~~~~~vs-~~--~gtT-------r--~i~~~~~--------------------   43 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN------RKKLARTS-KT--PGKT-------Q--LINFFNV--------------------   43 (170)
T ss_pred             EEEECCCCCCHHHHHHHHHC------CCCEEEEE-CC--CCEE-------E--EEEEEEE--------------------
T ss_conf             89998999999999999968------99627860-78--9778-------5--2058853--------------------


Q ss_pred             CCCEEEEECCCC--CCCHHHHHH----HHHHHHHHC-CCCCCCCCCCHHCCH--HHHHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf             588699833442--221124689----999998513-851100031011122--568888988763584-4077641157
Q gi|254780711|r  183 GYDAVILDTAGR--NHINDSLMQ----EISEIKSLT-NPHEILLVADALTGQ--DAVHLARNFDKIVDL-TGIILTRMDG  252 (461)
Q Consensus       183 ~~D~iiiDTaGR--~~~d~~lm~----El~~i~~~~-~p~e~~lV~da~~Gq--~a~~~a~~F~~~~~i-~giIlTKlD~  252 (461)
T Consensus        44 ~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~-~~kp~iiVlNKiDl  122 (170)
T cd01876          44 NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-LGIPFLVVLTKADK  122 (170)
T ss_pred             CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHH-CCCCEEEEEEEEEC
T ss_conf             87799996578401016877999999999999984063349999996322374868999999987-69987999986753


Q ss_pred             CCCCCH--HH-HHHHH-----HCCCHHHEEC--CCCCCCCCC
Q ss_conf             663303--67-77888-----4787302615--867232100
Q gi|254780711|r  253 DGRGGA--AL-SMRTV-----TGKPIKAIGT--GEKINDLEN  284 (461)
Q Consensus       253 ~akgG~--al-s~~~~-----~~~PI~fig~--GE~~~dle~  284 (461)
T Consensus       123 v~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~gi~~L~~  164 (170)
T cd01876         123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRA  164 (170)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             787789999999999874217998399998899977999999