HHsearch alignment for GI: 254780711 and conserved domain: cd01882
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.72 E-value=0.057 Score=35.23 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=32.6
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC----CCEEEECCC
Q ss_conf 2588418996234433346889999999986148----950782054
Q gi|254780711|r 96 NAPSPLVIMLVGLQGSGKTTTTAKIAYHLKTLKK----KKILMASLD 138 (461)
Q Consensus 96 ~~~~p~vIllvGl~GsGKTTT~aKLA~~~~~~~~----~kV~lv~~D 138 (461)
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K 81 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGK 81 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
T ss_conf 89999699998989977889999999998544375578887999468