HHsearch alignment for GI: 254780711 and conserved domain: cd01894
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.00 E-value=0.0047 Score=43.50 Aligned_cols=119 Identities=20% Similarity=0.304 Sum_probs=62.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 62344333468899999999861489507820542210047799998510347422233210368999999999974158
Q gi|254780711|r 105 LVGLQGSGKTTTTAKIAYHLKTLKKKKILMASLDVHRPAAQEQLRYLGEQIQVDTLEVIPEQSPEKIAIRATQSARDGGY 184 (461)
Q Consensus 105 lvGl~GsGKTTT~aKLA~~~~~~~~~kV~lv~~Dt~R~aA~eQL~~~a~~~~v~~~~~~~~~dp~~i~~~a~~~a~~~~~ 184 (461)
T Consensus 2 ivG~pN~GKSsL~N~l~-------~~~~~ivs~~---~gt--------Tr--~~~~~~----------------~~~~~~ 45 (157)
T cd01894 2 IVGRPNVGKSTLFNRLT-------GRRDAIVEDT---PGV--------TR--DRIYGE----------------AEWGGR 45 (157)
T ss_pred CCCCCCCCHHHHHHHHH-------CCCCEEEECC---CCC--------EE--EEEEEE----------------EEECCE
T ss_conf 04899988999999995-------8875354079---993--------56--678999----------------999998
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH-HHH-CCCCCCCCCCCHHCCHHHHH--HHHHHHHHCCCC-CEEEEECCCCCCCCHH
Q ss_conf 869983344222112468999999-851-38511000310111225688--889887635844-0776411576633036
Q gi|254780711|r 185 DAVILDTAGRNHINDSLMQEISEI-KSL-TNPHEILLVADALTGQDAVH--LARNFDKIVDLT-GIILTRMDGDGRGGAA 259 (461)
Q Consensus 185 D~iiiDTaGR~~~d~~lm~El~~i-~~~-~~p~e~~lV~da~~Gq~a~~--~a~~F~~~~~i~-giIlTKlD~~akgG~a 259 (461)
T Consensus 46 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~-~~kp~i~v~NK~D~~~~~~~~ 124 (157)
T cd01894 46 EFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK-SKKPVILVVNKVDNIKEEDEA 124 (157)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCHHHH
T ss_conf 8999857875556606789999999999986590799998999999899999999998-479809999787165864569
Q ss_pred H
Q ss_conf 7
Q gi|254780711|r 260 L 260 (461)
Q Consensus 260 l 260 (461)
T Consensus 125 ~ 125 (157)
T cd01894 125 A 125 (157)
T ss_pred H
T ss_conf 9